Package: drop-seq / 2.4.1+dfsg-1

Metadata

Package Version Patches format
drop-seq 2.4.1+dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
no_git.patch | (download)

src/ant/defs.xml | 5 0 + 5 - 0 !
1 file changed, 5 deletions(-)

 do not try to run git
debian_packaged_libs.patch | (download)

src/ant/defs.xml | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 use debian packaged java libs
link_excluded_file.patch | (download)

README.md | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 the pdf documentation had to be excluded as binary without source
 This patch links to the online version
paths_in_scripts.patch | (download)

src/scripts/Drop-seq_alignment.sh | 2 1 + 1 - 0 !
src/scripts/create_Drop-seq_reference_metadata.sh | 2 1 + 1 - 0 !
src/scripts/public_clp_template.sh | 4 2 + 2 - 0 !
3 files changed, 4 insertions(+), 4 deletions(-)

 putting debian paths for the jars in .sh executables
biojava4_packages.patch | (download)

src/java/org/broadinstitute/dropseqrna/sbarro/utils/ConsensusSequence.java | 4 2 + 2 - 0 !
src/java/org/broadinstitute/dropseqrna/sbarro/utils/ConsensusSequenceFactory.java | 4 2 + 2 - 0 !
src/java/org/broadinstitute/dropseqrna/sbarro/utils/ConsensusSequenceIndex.java | 4 2 + 2 - 0 !
src/java/org/broadinstitute/dropseqrna/sbarro/utils/FindSubSequence.java | 6 3 + 3 - 0 !
src/java/org/broadinstitute/dropseqrna/sbarro/utils/SubSequenceResultGlobalAlignment.java | 4 2 + 2 - 0 !
src/java/org/broadinstitute/dropseqrna/sbarro/utils/SubSequenceResultLocalAlignment.java | 4 2 + 2 - 0 !
6 files changed, 13 insertions(+), 13 deletions(-)

 change some paths do depend on debian-packaged biojava4