src/ant/defs.xml | 5 0 + 5 - 0 !
1 file changed, 5 deletions(-)

 do not try to run git

src/ant/defs.xml | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 use debian packaged java libs

README.md | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 the pdf documentation had to be excluded as binary without source
 This patch links to the online version

src/scripts/Drop-seq_alignment.sh | 2 1 + 1 - 0 !
src/scripts/create_Drop-seq_reference_metadata.sh | 2 1 + 1 - 0 !
src/scripts/public_clp_template.sh | 4 2 + 2 - 0 !
3 files changed, 4 insertions(+), 4 deletions(-)

 putting debian paths for the jars in .sh executables