1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
|
Author: Andreas Tille <tille@debian.org>
Last-Update: Wed, 24 Jun 2015 19:24:02 +0200
Description: Spelling fixes
--- a/src/ecogrep.c
+++ b/src/ecogrep.c
@@ -95,7 +95,7 @@ static void PrintHelp()
PP " -r : [R]estrict search to subtree under given taxomic id\n\n");
PP " -v : in[V]ert the sense of matching, to select non-matching lines.\n\n");
PP " argument:\n");
- PP " ecoPCR ouput file name\n");
+ PP " ecoPCR output file name\n");
PP "------------------------------------------\n\n");
PP " http://www.grenoble.prabi.fr/trac/ecoPCR/\n");
PP "------------------------------------------\n\n");
--- a/src/ecofind.c
+++ b/src/ecofind.c
@@ -175,16 +175,16 @@ static void PrintHelp()
PP "-a : [A]ll enable the search on all alternative names and not only scientific names.\n\n");
PP "-d : [D]atabase containing the taxonomy.\n");
PP " To match the expected format, the database\n");
- PP " has to be formated first by the ecoPCRFormat.py\n");
+ PP " has to be formatted first by the ecoPCRFormat.py\n");
PP " program located in the tools directory.\n");
PP " Write the database radical without any extension.\n\n");
PP "-h : [H]elp - print <this> help\n\n");
PP "-l : [L]ist all taxonomic rank available for -r option\n\n");
PP "-P : [P]ath : add a column containing the full path for each displayed taxon\n\n");
- PP "-p : [P]arents : specifiying this option displays all parental tree's information for the given taxid.\n\n");
+ PP "-p : [P]arents : specifying this option displays all parental tree's information for the given taxid.\n\n");
PP "-r : [R]estrict to given taxonomic rank\n\n");
- PP "-s : [S]ons: specifiying this option displays all subtree's information for the given taxid.\n\n");
- PP "-P : Display taxonomic [P]ath as suplementary column in output\n\n");
+ PP "-s : [S]ons: specifying this option displays all subtree's information for the given taxid.\n\n");
+ PP "-P : Display taxonomic [P]ath as supplementary column in output\n\n");
PP "arguments:\n");
PP "<taxon> name pattern bearing regular expressions\n\n");
PP "------------------------------------------\n");
@@ -337,7 +337,7 @@ int main(int argc, char **argv)
re_error = regcomp (&re_preg, argv[k], REG_NOSUB | REG_EXTENDED | REG_ICASE);
if (re_error)
{
- fprintf(stderr,"# misformed pattern '%s'\n",argv[k]);
+ fprintf(stderr,"# malformed pattern '%s'\n",argv[k]);
exit(1);
}
--- a/src/ecoisundertaxon.c
+++ b/src/ecoisundertaxon.c
@@ -32,7 +32,7 @@ static void PrintHelp()
PP " : taxonomic id.\n\n");
PP "------------------------------------------\n");
PP " database : to match the expected format, the database\n");
- PP " has to be formated first by the ecoPCRFormat.py program located.\n");
+ PP " has to be formatted first by the ecoPCRFormat.py program located.\n");
PP " in the tools directory. Type the radical only, leaving out the extension\n");
PP "------------------------------------------\n\n");
PP " https://www.grenoble.prabi.fr/trac/ecoPCR/wiki");
@@ -120,4 +120,4 @@ int main(int argc, char **argv){
printf("# taxid_1 (%d) is NOT son of taxid_2 (%d)\n",taxid_1, taxid_2);
return 0;
-}
\ No newline at end of file
+}
--- a/src/libecoPCR/ecoPCR.h
+++ b/src/libecoPCR/ecoPCR.h
@@ -210,7 +210,7 @@ econameidx_t *read_nameidx(const cha
/**
- * Read taxonomy data as formated by the ecoPCRFormat.py script.
+ * Read taxonomy data as formatted by the ecoPCRFormat.py script.
*
* This function is normaly uses internaly by the read_taxonomy
* function and should not be called directly.
|
