Package: fasta3 | Debian Sources

Package: fasta3 / 36.3.8h.2020-02-11-3

Metadata

Package	Version	Patches format
fasta3	36.3.8h.2020-02-11-3	3.0 (quilt)

Patch series

view the series file

Patch	File delta	Description
Makefile.patch \| (download)	make/Makefile \| 5 3 + 2 - 0 ! make/Makefile.linux \| 4 2 + 2 - 0 ! make/Makefile.linux32 \| 4 2 + 2 - 0 ! make/Makefile.linux32_sse2 \| 4 2 + 2 - 0 ! make/Makefile.linux64 \| 8 4 + 4 - 0 ! make/Makefile.linux64_sse2 \| 5 3 + 2 - 0 ! make/Makefile.pcom_t \| 8 4 + 4 - 0 ! 7 files changed, 20 insertions(+), 18 deletions(-)	makefile
simde \| (download)	src/global_sse2.c \| 3 2 + 1 - 0 ! src/glocal_sse2.c \| 3 2 + 1 - 0 ! src/smith_waterman_sse2.c \| 3 2 + 1 - 0 ! 3 files changed, 6 insertions(+), 3 deletions(-)	fix compiling on non x86 with simd everywhere
local_tests \| (download)	test/test.sh \| 116 58 + 58 - 0 ! test/test2G.sh \| 112 56 + 56 - 0 ! 2 files changed, 114 insertions(+), 114 deletions(-)	disable tests that require external databases
adjust scripts \| (download)	scripts/ann_exons_all.pl \| 2 1 + 1 - 0 ! scripts/ann_exons_ens.pl \| 2 1 + 1 - 0 ! scripts/ann_exons_ncbi.pl \| 2 1 + 1 - 0 ! scripts/ann_exons_up_sql.pl \| 2 1 + 1 - 0 ! scripts/ann_exons_up_sql_www.pl \| 2 1 + 1 - 0 ! scripts/ann_exons_up_www.pl \| 2 1 + 1 - 0 ! scripts/ann_feats2ipr.pl \| 2 1 + 1 - 0 ! scripts/ann_feats2ipr_e.pl \| 2 1 + 1 - 0 ! scripts/ann_feats_up_sql.pl \| 2 1 + 1 - 0 ! scripts/ann_feats_up_www2.pl \| 2 1 + 1 - 0 ! scripts/ann_ipr_www.pl \| 2 1 + 1 - 0 ! scripts/ann_pdb_cath.pl \| 2 1 + 1 - 0 ! scripts/ann_pdb_vast.pl \| 2 1 + 1 - 0 ! scripts/ann_pfam30_tmptbl.pl \| 2 1 + 1 - 0 ! scripts/ann_pfam_sql.pl \| 2 1 + 1 - 0 ! scripts/ann_pfam_www.pl \| 2 1 + 1 - 0 ! scripts/ann_script_list \| 16 7 + 9 - 0 ! scripts/ann_upfeats_pfam_www_e.pl \| 2 1 + 1 - 0 ! scripts/annot_blast_btop2.pl \| 2 1 + 1 - 0 ! scripts/annot_blast_btop3.py \| 2 1 + 1 - 0 ! scripts/annot_blast_btop4.py \| 2 1 + 1 - 0 ! scripts/blastp_annot_cmd.sh \| 6 3 + 3 - 0 ! scripts/blastp_cmd.sh \| 2 1 + 1 - 0 ! scripts/exp_up_ensg.pl \| 2 1 + 1 - 0 ! scripts/expand_links.pl \| 2 1 + 1 - 0 ! scripts/expand_refseq_isoforms.pl \| 2 1 + 1 - 0 ! scripts/expand_uniref50.pl \| 2 1 + 1 - 0 ! scripts/expand_up_isoforms.pl \| 2 1 + 1 - 0 ! scripts/fasta_annot_cmd.sh \| 6 3 + 3 - 0 ! scripts/get_genome_seq.py \| 2 1 + 1 - 0 ! scripts/get_protein.py \| 2 1 + 1 - 0 ! scripts/get_protein_sql.py \| 2 1 + 1 - 0 ! scripts/get_protein_sql_www.py \| 2 1 + 1 - 0 ! scripts/get_refseq.py \| 2 1 + 1 - 0 ! scripts/get_uniprot.py \| 2 1 + 1 - 0 ! scripts/get_up_prot_iso_sql.py \| 2 1 + 1 - 0 ! scripts/lav2plt.pl \| 2 1 + 1 - 0 ! scripts/lavplt_ps.pl \| 2 1 + 1 - 0 ! scripts/lavplt_svg.pl \| 2 1 + 1 - 0 ! scripts/links2sql.pl \| 2 1 + 1 - 0 ! scripts/m8_btop_msa.pl \| 2 1 + 1 - 0 ! scripts/m9B_btop_msa.pl \| 2 1 + 1 - 0 ! scripts/map_exon_coords.py \| 2 1 + 1 - 0 ! scripts/merge_blast_btab.pl \| 2 1 + 1 - 0 ! scripts/merge_fasta_btab.pl \| 2 1 + 1 - 0 ! scripts/relabel_domains.py \| 2 1 + 1 - 0 ! scripts/rename_exons.py \| 2 1 + 1 - 0 ! scripts/summ_domain_ident.pl \| 2 1 + 1 - 0 ! scripts/test_ann_scripts.sh \| 22 11 + 11 - 0 ! scripts/test_py.sh \| 67 34 + 33 - 0 ! 50 files changed, 103 insertions(+), 104 deletions(-)	adjust for installed use

1