Package: freebayes / 1.2.0-2

Metadata

Package Version Patches format
freebayes 1.2.0-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
use_debian_libs.patch | (download)

src/Makefile | 51 8 + 43 - 0 !
1 file changed, 8 insertions(+), 43 deletions(-)

 use debian packaged bamtools


fix_all_target.patch | (download)

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 vcflib needs to be packaged separately


fix_test.patch | (download)

scripts/freebayes-parallel | 2 1 + 1 - 0 !
test/Makefile | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 vcflib is in a different package - do not test this


vcffirstheader.patch | (download)

vcflib/scripts/vcffirstheader | 16 16 + 0 - 0 !
1 file changed, 16 insertions(+)

 this script was not part of the vcflib release
 tarball but is available in Git
   https://github.com/vcflib/vcflib/blob/master/scripts/vcffirstheader
 Since it is used in the test suite of freebayes 1.1 it is installed
 here as quilt patch.  Once vcflib might be release including the
 scripts directory the patch can be dropped and replaced by an according
 symlink inside rules or by setting PATH accordingly


use_cpp11.patch | (download)

src/Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 compile as c++11