Package: gatb-core / 1.4.2+dfsg-6

Metadata

Package Version Patches format
gatb-core 1.4.2+dfsg-6 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
use_debian_packaged_hdf5.patch | (download)

gatb-core/CMakeLists.txt | 32 19 + 13 - 0 !
gatb-core/thirdparty/CMakeLists.txt | 27 5 + 22 - 0 !
2 files changed, 24 insertions(+), 35 deletions(-)

 use debian packaged hdf5


fix_hdf5_includes.patch | (download)

gatb-core/src/gatb/tools/math/LargeInt.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/math/NativeInt128.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/math/NativeInt16.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/math/NativeInt32.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/math/NativeInt64.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/math/NativeInt8.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/misc/api/Abundance.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/misc/api/IHistogram.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp | 2 1 + 1 - 0 !
gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp | 2 1 + 1 - 0 !
11 files changed, 11 insertions(+), 11 deletions(-)

 fix hdf5 includes.
  --> https://lists.debian.org/debian-mentors/2017/11/msg00227.html


dynamic_lib.patch | (download)

gatb-core/src/CMakeLists.txt | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 create additional dynamic library


fix_install_location.patch | (download)

gatb-core/CMakeLists.txt | 9 5 + 4 - 0 !
1 file changed, 5 insertions(+), 4 deletions(-)

 install examples into correct dir


set_soversion.patch | (download)

gatb-core/src/CMakeLists.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 invent soversion 0 since upstream does not set soversion


dynamic_linking_of_tools.patch | (download)

gatb-core/tools/CMakeLists.txt | 16 0 + 16 - 0 !
1 file changed, 16 deletions(-)

 dynamic linking against own library
 Does not work unfortunately


multiarch.patch | (download)

gatb-core/src/CMakeLists.txt | 6 4 + 2 - 0 !
1 file changed, 4 insertions(+), 2 deletions(-)

 support multiarch


spelling.patch | (download)

gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp | 8 4 + 4 - 0 !
gatb-core/src/gatb/tools/compression/DnaCoder.cpp | 4 2 + 2 - 0 !
gatb-core/src/gatb/tools/compression/Leon.cpp | 2 1 + 1 - 0 !
3 files changed, 7 insertions(+), 7 deletions(-)

 fix spelling issues


avoid_ msse | (download)

gatb-core/CMakeLists.txt | 40 2 + 38 - 0 !
1 file changed, 2 insertions(+), 38 deletions(-)

 avoid -msse2 due to building on qemu

use int as return of fgetc.patch | (download)

gatb-core/src/gatb/system/impl/FileSystemCommon.hpp | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use int as return of fgetc