Makefile | 72 35 + 37 - 0 !
1 file changed, 35 insertions(+), 37 deletions(-)

 use debian's genometools

testsuite/gth_include.rb | 6 3 + 3 - 0 !
testsuite/gthbssmtrain_include.rb | 10 5 + 5 - 0 !
testsuite/ngasp_include.rb | 68 34 + 34 - 0 !
3 files changed, 42 insertions(+), 42 deletions(-)

 use debian's gt path

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 enable full hardening

src/gth/bssm_param.c | 38 2 + 36 - 0 !
src/gth/input.c | 40 5 + 35 - 0 !
src/libgenomethreader/findfile.c | 74 74 + 0 - 0 !
src/libgenomethreader/findfile.h | 26 26 + 0 - 0 !
src/libgenomethreader/gthmkvtree.c | 38 7 + 31 - 0 !
src/libgenomethreader/gthpre.c | 52 13 + 39 - 0 !
6 files changed, 127 insertions(+), 141 deletions(-)

 use debian's resource paths
 GenomeThreader in the original form requires environment variables set
 to specific paths _or_ uses hardcoded subdirectories of the directory where
 the gth binary is. Since this is /usr/bin in Debian and the FHS disallows
 subdirs there. we patch the source to add new default search directories.

Makefile | 10 0 + 10 - 0 !
1 file changed, 10 deletions(-)

---

Makefile | 2 1 + 1 - 0 !
src/libgenomethreader/gthversionfunc.c | 2 2 + 0 - 0 !
2 files changed, 3 insertions(+), 1 deletion(-)

 improve reproducibility

Makefile | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 disable some tests on i386