Makefile | 5 3 + 2 - 0 !
doc/devguide/devguide.tex | 2 1 + 1 - 0 !
doc/manuals/annotationsketch.tex | 11 6 + 5 - 0 !
doc/manuals/genomediff.tex | 1 1 + 0 - 0 !
doc/manuals/hop.tex | 1 1 + 0 - 0 !
doc/manuals/ltrdigest.tex | 1 1 + 0 - 0 !
doc/manuals/ltrharvest.tex | 1 1 + 0 - 0 !
doc/manuals/mgth.tex | 1 1 + 0 - 0 !
doc/manuals/packedindex.tex | 1 1 + 0 - 0 !
doc/manuals/readjoiner.tex | 1 1 + 0 - 0 !
doc/manuals/repfind.tex | 1 1 + 0 - 0 !
doc/manuals/tagerator.tex | 1 1 + 0 - 0 !
doc/manuals/tallymer.tex | 1 1 + 0 - 0 !
doc/manuals/uniquesub.tex | 1 1 + 0 - 0 !
14 files changed, 21 insertions(+), 8 deletions(-)

 make build reproducible

Makefile | 9 6 + 3 - 0 !
gtpython/gt/dlload.py | 6 5 + 1 - 0 !
2 files changed, 11 insertions(+), 4 deletions(-)

 add soname to linker call in makefile 
 Upstream Makefile does not build a shared object with soname or version 
 number. This patch adds support for sonames, as well a symlink from
 the .so to the .so.X file.

Makefile | 15 14 + 1 - 0 !
1 file changed, 14 insertions(+), 1 deletion(-)

 add static link to libbam.a
 The Debian libbam package only provides a static library to link to,
 adding this to the Makefile.

doc/devguide/.gitignore | 1 0 + 1 - 0 !
doc/manuals/.gitignore | 8 0 + 8 - 0 !
2 files changed, 9 deletions(-)

 remove unneeded .gitignores or .gitignore entries

src/core/output_file.c | 6 6 + 0 - 0 !
src/core/seq_iterator_fastq.c | 8 8 + 0 - 0 !
2 files changed, 14 insertions(+)

 add missing/renamed function wrappers.

doc/manuals/matstat.tex | 164 162 + 2 - 0 !
doc/manuals/uniquesub.tex | 86 0 + 86 - 0 !
2 files changed, 162 insertions(+), 88 deletions(-)

 split manuals.

Makefile | 22 12 + 10 - 0 !
1 file changed, 12 insertions(+), 10 deletions(-)

 use mx32

gtscripts/gtdoc.lua | 21 20 + 1 - 0 !
1 file changed, 20 insertions(+), 1 deletion(-)

 gather api information by sorted traversal
 lfs.dir() is not guaranteed to deliver files reproducibly.

Makefile | 16 0 + 16 - 0 !
1 file changed, 16 deletions(-)

 remove explicit -m32 and -m64

Makefile | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 add missing dependencies for gt_config.h