Package: gff2aplot / 2.0-11
Metadata
Package | Version | Patches format |
---|---|---|
gff2aplot | 2.0-11 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
non_lexical_loop_iterator.patch | (download) |
src/gff2aplot.pl |
19 10 + 9 - 0 ! |
make sure that iterator variable is explicitly decalred as a lexcical using my keyword. See PBP, page 108. Add perl shebang. |
02 blat2gff.diff | (download) |
src/blat2gff.pl |
8 4 + 4 - 0 ! |
--- |
03 parseblast.diff | (download) |
src/parseblast.pl |
4 2 + 2 - 0 ! |
--- |
use dpkg buildflags.patch | (download) |
src/ali2gff/Makefile |
2 1 + 1 - 0 ! |
use build flags from environment (dpkg-buildflags). Necessary for hardening flags. |
mayhem.patch | (download) |
src/ali2gff/ali2gff.c |
10 7 + 3 - 0 ! |
deal with mayhem issue |
fis privacy breach.patch | (download) |
examples/mhcregion/index.html |
30 15 + 15 - 0 ! |
fix privacy issues by linking to local images, js and css locally |
perl_5.28.patch | (download) |
src/gff2aplot.pl |
13 9 + 4 - 0 ! |
can't use 'defined(@array)' (maybe you should just omit the defined()?) at /usr/bin/gff2aplot line 1737. |
fix_install_ali2gff.patch | (download) |
Makefile |
5 3 + 2 - 0 ! |
make sure target dir exists when performing parallel builds Somehow CP is resolved to "cp 1" - no idea why, just force proper copy statement |
enhance_sprintf_buffer.patch | (download) |
src/ali2gff/ali2gff.c |
10 5 + 5 - 0 ! |
enhance print buffer to avoid: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 36 and 3418 bytes into a destination of size 1000 Finally this patch is not fully working since the enhanced buffers make sprint assume that even larger buffers are needed. |
fix_README_used_for_test.patch | (download) |
examples/splice_sites/README |
3 1 + 2 - 0 ! |
the readme file is used as shell script and one function is broken. It should return basenames of *.ps files. This is fixed here |