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Description: loading the native library from /usr/lib/jni as we don't want to
bundle the shared libraries into the jar.
Author: Pierre Gruet <pgt@debian.org>
Forwarded: not-needed
Last-Update: 2022-09-22
--- a/src/main/java/com/intel/gkl/NativeLibraryLoader.java
+++ b/src/main/java/com/intel/gkl/NativeLibraryLoader.java
@@ -96,7 +96,7 @@
final String systemLibraryName = System.mapLibraryName(libraryName);
// load from the java.library.path
- if (System.getenv(USE_LIBRARY_PATH) != null) {
+ //if (System.getenv(USE_LIBRARY_PATH) != null) {
final String javaLibraryPath = System.getProperty("java.library.path");
try {
@@ -108,35 +108,6 @@
logger.warn(String.format("OVERRIDE DEFAULT: Unable to load %s from %s", systemLibraryName, javaLibraryPath));
return false;
}
- }
-
- // load from the java classpath
- final String resourcePath = "native/" + systemLibraryName;
- final URL inputUrl = NativeLibraryLoader.class.getResource(resourcePath);
- if (inputUrl == null) {
- logger.warn(String.format("Unable to find native library: %s" , resourcePath));
- return false;
- }
- logger.info(String.format("Loading %s from %s", systemLibraryName, inputUrl.toString()));
-
- try {
- final File temp = File.createTempFile(FilenameUtils.getBaseName(resourcePath),
- "." + FilenameUtils.getExtension(resourcePath), tempDir);
- FileUtils.copyURLToFile(inputUrl, temp);
- temp.deleteOnExit();
- if(checkPath(temp.getAbsolutePath())) {
- System.load(temp.getAbsolutePath());
- logger.debug(String.format("Extracting %s to %s", systemLibraryName, temp.getAbsolutePath()));
- }
- else{
- logger.warn(String.format("Unable to load %s to %s", systemLibraryName, temp.getAbsolutePath()));
- }
- } catch (Exception|Error e) {
- logger.warn(String.format("Unable to load %s from %s (%s)", systemLibraryName, resourcePath, e.getMessage()));
- return false;
- }
-
- loadedLibraries.add(libraryName);
- return true;
+ //}
}
}
--- a/build.gradle
+++ b/build.gradle
@@ -136,6 +136,7 @@
baseName = "gkl"
// include LICENSE file in jar
from "LICENSE"
+ exclude('**/*.so')
}
task javadocJar(type: Jar, dependsOn: javadoc) {
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