documentation/man/hmmalign.man | 18 9 + 9 - 0 !
documentation/man/hmmbuild.man | 12 6 + 6 - 0 !
documentation/man/hmmcalibrate.man | 20 10 + 10 - 0 !
documentation/man/hmmconvert.man | 12 6 + 6 - 0 !
documentation/man/hmmemit.man | 16 8 + 8 - 0 !
documentation/man/hmmer.man | 20 10 + 10 - 0 !
documentation/man/hmmfetch.man | 16 8 + 8 - 0 !
documentation/man/hmmindex.man | 14 7 + 7 - 0 !
documentation/man/hmmpfam.man | 22 11 + 11 - 0 !
documentation/man/hmmsearch.man | 20 10 + 10 - 0 !
10 files changed, 85 insertions(+), 85 deletions(-)

 rename binaries in man pages
 Binaries are renamed in man pages to match their new file names.
 .
 No need to forward this patch as it tackles issues with the way hmmer versions
 are packaged for Debian.

00README | 3 2 + 1 - 0 !
INSTALL | 2 1 + 1 - 0 !
NOTES | 2 1 + 1 - 0 !
documentation/man/hmmalign.man | 5 2 + 3 - 0 !
documentation/man/hmmbuild.man | 5 2 + 3 - 0 !
documentation/man/hmmcalibrate.man | 5 2 + 3 - 0 !
documentation/man/hmmconvert.man | 5 2 + 3 - 0 !
documentation/man/hmmemit.man | 5 2 + 3 - 0 !
documentation/man/hmmer.man | 2 1 + 1 - 0 !
documentation/man/hmmfetch.man | 5 2 + 3 - 0 !
documentation/man/hmmindex.man | 5 2 + 3 - 0 !
documentation/man/hmmpfam.man | 5 2 + 3 - 0 !
documentation/man/hmmsearch.man | 5 2 + 3 - 0 !
13 files changed, 23 insertions(+), 31 deletions(-)

 corrections to man pages
 The WWW home of hmmer (URL) is updated. Also, as we now do not include
 Userguide.pdf in this package, references to that are changed to
 ftp://selab.janelia.org/pub/software/hmmer/2.3.2/Userguide.pdf .
 .
 No need to forward this patch as it tackles issues with the way this hmmer version
 is packaged for Debian.

documentation/man/hmmbuild.man | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix spelling in manpage

Makefile.in | 7 0 + 7 - 0 !
configure | 4 2 + 2 - 0 !
src/Makefile.in | 6 3 + 3 - 0 !
src/config.h.in | 2 0 + 2 - 0 !
src/funcs.h | 1 0 + 1 - 0 !
src/mathsupport.c | 17 0 + 17 - 0 !
testsuite/Makefile.in | 6 3 + 3 - 0 !
7 files changed, 8 insertions(+), 35 deletions(-)

 link against debian packaged libsquid and remove
 duplicated functions from there

src/Makefile.in | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 linking with other projects requires -fpic which
 is sneaked in by this patch.

configure | 16 14 + 2 - 0 !
1 file changed, 14 insertions(+), 2 deletions(-)

 add "runstatedir" option adopted by dh-compat 11 and above
Last-Changed: September 9, 2020