Package: htslib / 1.11-4

Metadata

Package Version Patches format
htslib 1.11-4 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
no_git_version | (download)

version.sh | 10 5 + 5 - 0 !
1 file changed, 5 insertions(+), 5 deletions(-)

 don't check git tags for versioning

define_PATH_MAX.patch | (download)

cram/os.h | 7 7 + 0 - 0 !
1 file changed, 7 insertions(+)

 define path_max as it is done in cram/open_trace_file.c if
 not existent.  The definition should be removed from this C file since the
 header file affects all three C files where this definition is used.


fPIC.patch | (download)

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 build with -fpic instead of -fpic
testShebang.patch | (download)

test/test-logging.pl | 2 1 + 1 - 0 !
test/test.pl | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 build with -fpic instead of -fpic
fix_float_precision | (download)

sam.c | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 ppc64el float handling fix

I dug a bit further and it looks like that sam_parse1() is actually
cram_to_bam_export.patch | (download)

cram/cram_decode.c | 4 2 + 2 - 0 !
cram/cram_decode.h | 17 17 + 0 - 0 !
2 files changed, 19 insertions(+), 2 deletions(-)

 exports the cram_to_bam function to support the
  sambamba package.
273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch | (download)

plugin.c | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 [patch] variable name used in dlsym corrected.
Bug-Debian: https://bugs.debian.org/971542

The hfile irods plugin depends on a constructed symbol name which was no longer being used.