Package: igv | Debian Sources

Package: igv / 2.6.3+dfsg-3

Metadata

Package	Version	Patches format
igv	2.6.3+dfsg-3	3.0 (quilt)

Patch series

view the series file

Patch	File delta	Description
gradle_dependencies.patch \| (download)	build_java11.gradle \| 19 18 + 1 - 0 ! src/main/java11/module-info.java \| 3 1 + 2 - 0 ! 2 files changed, 19 insertions(+), 3 deletions(-)	adapting gradle build files to debian environment Paths of Debian libraries are indicated.
handle_old_htsjdk.patch \| (download)	src/main/java/org/broad/igv/util/HttpUtils.java \| 2 1 + 1 - 0 ! 1 file changed, 1 insertion(+), 1 deletion(-)	deleting a line calling a helper class We cannot use helper classes with the current version of htsjdk.
skip_tests_network.patch \| (download)	build_java11.gradle \| 4 4 + 0 - 0 ! src/test/java/org/broad/igv/feature/AminoAcidManagerTest.java \| 8 8 + 0 - 0 ! src/test/java/org/broad/igv/feature/CodonTest.java \| 1 1 + 0 - 0 ! src/test/java/org/broad/igv/feature/ExonTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/feature/FeatureDBTest.java \| 6 6 + 0 - 0 ! src/test/java/org/broad/igv/feature/genome/GenomeTest.java \| 3 3 + 0 - 0 ! src/test/java/org/broad/igv/feature/genome/SequenceWrapperTest.java \| 7 6 + 1 - 0 ! src/test/java/org/broad/igv/feature/genome/fasta/FastaBlockCompressedSequenceTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/sam/AlignmentDataManagerTest.java \| 1 1 + 0 - 0 ! src/test/java/org/broad/igv/sam/cram/CRAMReaderTest.java \| 4 3 + 1 - 0 ! src/test/java/org/broad/igv/sam/cram/IGVReferenceSourceTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/sam/lite/BAMIndexTest.java \| 3 3 + 0 - 0 ! src/test/java/org/broad/igv/sam/reader/BAMHttpReaderTest.java \| 4 4 + 0 - 0 ! src/test/java/org/broad/igv/tdf/TDFReaderTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/tdf/TDFRegressionTests.java \| 4 4 + 0 - 0 ! src/test/java/org/broad/igv/tools/CoverageCounterTest.java \| 1 1 + 0 - 0 ! src/test/java/org/broad/igv/tools/IGVToolsTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/tools/converters/ExpressionFormatterTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/tools/motiffinder/MotifFinderSourceTest.java \| 4 4 + 0 - 0 ! src/test/java/org/broad/igv/tools/parsers/GCTtoIGVConverterTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/track/TrackLoaderTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/util/HttpUtilsTest.java \| 3 3 + 0 - 0 ! src/test/java/org/broad/igv/util/IGVHttpClientUtilsTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/util/ParsingUtilsTest.java \| 2 2 + 0 - 0 ! src/test/java/org/broad/igv/util/stream/IGVSeekableBufferedStreamTest.java \| 3 3 + 0 - 0 ! 25 files changed, 74 insertions(+), 2 deletions(-)	ignoring build-time tests that require network access

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