Package: iva / 1.0.9+ds-11
Metadata
Package | Version | Patches format |
---|---|---|
iva | 1.0.9+ds-11 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
disable multithreaded test.patch | (download) |
iva/tests/seed_processor_test.py |
2 1 + 1 - 0 ! |
disable multithreaded test One of the tests uses Python's multiprocessing, which on some machines causes FTBFS due to problematic permissions on /dev/shm, resulting in: PermissionError: [Errno 13] Permission denied This patch disables this test to allow building at the minor expense of this missing test. |
perl shebang.patch | (download) |
iva/ratt/embl2gff.pl |
2 1 + 1 - 0 ! |
use debian's perl path |
samtools1.10 | (download) |
iva/mapping.py |
4 3 + 1 - 0 ! |
fix samtools version parsing so that 1.10 > 1.2 |
disable ram test.patch | (download) |
iva/tests/assembly_test.py |
2 1 + 1 - 0 ! |
disable tests that run kmc KMC needs a lot of memory (multi-gigabyte) and fails hard when that memory cannot be allocated, which can cause builds to fail when tests are crashing because of that on low-spec buildds. Let's disable these tests for now. |
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