Package: khmer / 2.1.2+dfsg-8

Metadata

Package Version Patches format
khmer 2.1.2+dfsg-8 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
update manifest | (download)

MANIFEST.in | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 contributing.md has moved and isn't installed anymore

setup py py3 | (download)

setup.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use /usr/bin/env python3 as the crunchbang interpreter in setup.py

local libs | (download)

setup.cfg | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 use debian packaged libraries
older setuptools | (download)

setup.py | 2 0 + 2 - 0 !
1 file changed, 2 deletions(-)

 fix version of setuptools
disable_google_analytics | (download)

doc/_templates/page.html | 2 2 + 0 - 0 !
doc/conf.py | 2 1 + 1 - 0 !
2 files changed, 3 insertions(+), 1 deletion(-)

 turn off google analytics as per lintian warning
get_version | (download)

doc/conf.py | 10 7 + 3 - 0 !
1 file changed, 7 insertions(+), 3 deletions(-)

 use debian package version instead of git version

install prefix | (download)

Makefile | 2 1 + 1 - 0 !
src/oxli/Makefile | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 use correct library version etc. (fixed by upstream #1240, remove for 2.0)

cpython bug empty exceptions | (download)

tests/test_read_parsers.py | 15 12 + 3 - 0 !
1 file changed, 12 insertions(+), 3 deletions(-)

 work around a suspected cpython bug

Occurs when exception strings are empty. See upstream issues #885, #1190.

amend skip | (download)

scripts/extract-paired-reads.py | 2 1 + 1 - 0 !
tests/khmer_tst_utils.py | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 fix fatal pytest.skip usage

setup.py py3 | (download)

setup.py | 6 5 + 1 - 0 !
1 file changed, 5 insertions(+), 1 deletion(-)

 fix py3 compat for setup.py


python3 | (download)

Makefile | 18 9 + 9 - 0 !
1 file changed, 9 insertions(+), 9 deletions(-)

 s/python/python3/ as appropriate


fix_liboxli_test | (download)

src/oxli/test-compile.cc | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix liboxli sanity check test