Package: kineticstools / 0.6.1+git20180425.27a1878-2

Metadata

Package Version Patches format
kineticstools 0.6.1+git20180425.27a1878-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
man pages.patch | (download)

doc/manual.rst | 36 20 + 16 - 0 !
1 file changed, 20 insertions(+), 16 deletions(-)

 format rst documentation into input for rst2man
tests import.patch | (download)

bin/testShared.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix import statement for tests
verbose testing.patch | (download)

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 make test execution verbose
deactivate tests requiring unavailable data.patch | (download)

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 don't execute tests that require unavailable data files
compiled extension.patch | (download)

kineticsTools/ipdModel.py | 28 9 + 19 - 0 !
1 file changed, 9 insertions(+), 19 deletions(-)

 improve detection of compiled extension
 The original code cannot detect the library if the package is not installed,
 which prevents running the unit tests at build time.
 Changes were also necessary for python to be able to find the compiled
 extension after pybuild renames it with the multiarch triplet.
spelling.patch | (download)

doc/manual.rst | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 minor spelling issues
ignore_h5py_deprecation_warnings_in_test.patch | (download)

test/cram/case-ctrl.t | 2 1 + 1 - 0 !
test/cram/detection.t | 2 1 + 1 - 0 !
test/cram/identify.t | 2 1 + 1 - 0 !
test/cram/methyl-fraction-case-ctrl.t | 2 1 + 1 - 0 !
4 files changed, 4 insertions(+), 4 deletions(-)

 ignore deprecation warnings breaking test suite
 Since the error log is not empty but contains
 .
    /usr/lib/python2.7/dist-packages/h5py/_hl/dataset.py:313: H5pyDeprecationWarning: dataset.value has been deprecated. Use dataset[()] instead.
    "Use dataset[()] instead.", H5pyDeprecationWarning)
 .
 the test suite would fail.  I've compared the results to be the same with
 python-h5py version 2.8.0-3 (no deprecation warning) and version 2.9.0
 with the warning above.  The results are the same so the warning does not
 seem to have any negative effect here
Bug-Debian: https://bugs.debian.org/921382