Description: spelling patch
Author: Étienne Mollier <etienne.mollier@mailoo.org>
Forwarded: no
Last-Update: 2020-12-10
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- a/kmc_tools/kmc2_db_reader.h
+++ b/kmc_tools/kmc2_db_reader.h
@@ -1434,7 +1434,7 @@
 	my_fseek(kmc_pre, 4, SEEK_SET);
 	if (fread(LUTS, sizeof(uint64), lut_recs, kmc_pre) != lut_recs)
 	{
-		std::cerr << "Some error occured while reading LUTS from kmc2 prefix file \n";
+		std::cerr << "Some error occurred while reading LUTS from kmc2 prefix file \n";
 		exit(1);
 	}
 	fclose(kmc_pre);
@@ -1934,7 +1934,7 @@
 		db_reader_counters_only = std::make_unique<CKMC2DbReaderCountersOnly<SIZE>>(header, desc);
 		break;
 	default: //should never be here
-		std::cerr << "Error: unknow open mode \n";
+		std::cerr << "Error: unknown open mode \n";
 		exit(1);
 	}
 }
--- a/kmc_tools/parameters_parser.cpp
+++ b/kmc_tools/parameters_parser.cpp
@@ -149,7 +149,7 @@
 				config.filtering_params.input_file_type = CFilteringParams::file_type::fastq;
 				break;
 			default:
-				cerr << "Error: unknow parameter " << argv[pos - 1] << "\n";
+				cerr << "Error: unknown parameter " << argv[pos - 1] << "\n";
 				exit(1);
 				break;
 			}
@@ -219,7 +219,7 @@
 		}
 		else
 		{
-			cerr << "Warning: Unknow parameter for filter operation: " << argv[pos] << "\n";
+			cerr << "Warning: Unknown parameter for filter operation: " << argv[pos] << "\n";
 		}
 		++pos;
 	}
@@ -263,7 +263,7 @@
 		}
 		else
 		{
-			cerr << "Error: Unknow parameter: " << argv[pos];
+			cerr << "Error: Unknown parameter: " << argv[pos];
 			exit(1);
 		}
 	}
@@ -575,7 +575,7 @@
 		}
 		else
 		{
-			cerr << "Error: Unknow parameter: " << argv[pos];
+			cerr << "Error: Unknown parameter: " << argv[pos];
 			Usage();
 			exit(1);
 		}
@@ -635,7 +635,7 @@
 	}
 	else
 	{
-		cerr << "Error: Unknow mode: " << argv[pos] << "\n";
+		cerr << "Error: Unknown mode: " << argv[pos] << "\n";
 		Usage();
 		exit(1);
 	}
@@ -655,7 +655,7 @@
 		read_output_fastq_desc();
 		if (config.filtering_params.use_float_value && config.filtering_params.filter_mode != CFilteringParams::FilterMode::normal)
 		{
-			cerr << "Error: trim (-t) and soft mask (-hm) are not compatibile with float values of cut off (-ci -cx)\n";
+			cerr << "Error: trim (-t) and soft mask (-hm) are not compatible with float values of cut off (-ci -cx)\n";
 			exit(1);
 		}
 	}
@@ -954,4 +954,4 @@
 
 
 
-// ***** EOF
\ No newline at end of file
+// ***** EOF
--- a/kmc_tools/parser.cpp
+++ b/kmc_tools/parser.cpp
@@ -140,7 +140,7 @@
 					desc.cutoff_max = atoi(tmp.c_str() + 3);
 					continue;
 				}
-				std::cerr << "Error: Unknow parameter " << tmp << " for variable " << match[1] << ", line: "<< line_no <<"\n";
+				std::cerr << "Error: Unknown parameter " << tmp << " for variable " << match[1] << ", line: "<< line_no <<"\n";
 				exit(1);
 			}
 
@@ -232,7 +232,7 @@
 				}
 				continue;
 			}
-			std::cerr << "Error: Unknow parameter " << tmp << " for variable " << tmp << ", line: " << line_no << "\n";
+			std::cerr << "Error: Unknown parameter " << tmp << " for variable " << tmp << ", line: " << line_no << "\n";
 			exit(1);
 		}
 	}
@@ -253,4 +253,4 @@
 	}
 }
 
-// ***** EOF
\ No newline at end of file
+// ***** EOF
--- a/kmc_core/fastq_reader.cpp
+++ b/kmc_core/fastq_reader.cpp
@@ -388,7 +388,7 @@
 		else
 		{
 			std::ostringstream ostr;
-			ostr << "Error: should never be here, plase contact authors, CODE: FastqReader_" << __LINE__;
+			ostr << "Error: should never be here, please contact authors, CODE: FastqReader_" << __LINE__;
 			CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 		}
 	}
--- a/kmc_core/kb_completer.cpp
+++ b/kmc_core/kb_completer.cpp
@@ -104,7 +104,7 @@
 		else
 		{
 			std::ostringstream ostr;
-			ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+			ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 			CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 		}
 	}
@@ -178,7 +178,7 @@
 			else
 			{
 				std::ostringstream ostr;
-				ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+				ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 				CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 			}
 			
--- a/kmc_core/kb_completer.h
+++ b/kmc_core/kb_completer.h
@@ -387,7 +387,7 @@
 		return CompleteKFFFormat(result);
 	default:
 		std::ostringstream ostr;
-		ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+		ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 		CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 	}
 	assert(false); //Should never be here
--- a/kmc_core/kb_sorter.h
+++ b/kmc_core/kb_sorter.h
@@ -1051,7 +1051,7 @@
 							else
 							{
 								std::ostringstream ostr;
-								ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+								ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 								CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 							}
 						}
@@ -1096,7 +1096,7 @@
 					else
 					{
 						std::ostringstream ostr;
-						ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+						ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 						CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 					}
 				}
@@ -1213,7 +1213,7 @@
 						else
 						{
 							std::ostringstream ostr;
-							ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+							ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 							CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 						}
 					}
@@ -1259,7 +1259,7 @@
 				else
 				{
 					std::ostringstream ostr;
-					ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+					ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 					CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 				}
 			}
--- a/kmc_core/kmc.h
+++ b/kmc_core/kmc.h
@@ -940,7 +940,7 @@
 	else
 	{
 		std::ostringstream ostr;
-		ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+		ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 		CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 	}
 
@@ -1471,7 +1471,7 @@
 	else
 	{
 		std::ostringstream ostr;
-		ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+		ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 		CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 	}
 
--- a/kmc_tools/kff_info_reader.cpp
+++ b/kmc_tools/kff_info_reader.cpp
@@ -34,7 +34,7 @@
 	marker[3] = '\0';
 	fread(marker, 1, 3, file);
 	if (strncmp(marker, "KFF", 3) != 0)
-		throw std::runtime_error("Error: missing KFF marker at the begining of file " + path);
+		throw std::runtime_error("Error: missing KFF marker at the beginning of file " + path);
 
 	my_fseek(file, -3, SEEK_END);
 	fread(marker, 1, 3, file);
@@ -300,4 +300,4 @@
 CKFFInfoReader::~CKFFInfoReader()
 {
 	fclose(file);
-}
\ No newline at end of file
+}
--- a/kmc_tools/kff_db_reader.h
+++ b/kmc_tools/kff_db_reader.h
@@ -49,7 +49,7 @@
 			db_reader_sequential = std::make_unique<CKFFDbReaderSeq<SIZE>>(header, desc);
 			break;		
 		default: //should never be here
-			std::cerr << "Error: unknow open mode \n";
+			std::cerr << "Error: unknown open mode \n";
 			exit(1);
 		}
 	}
@@ -1491,4 +1491,4 @@
 	}
 };
 
-#endif
\ No newline at end of file
+#endif
--- a/kmc_core/kxmer_set.h
+++ b/kmc_core/kxmer_set.h
@@ -463,7 +463,7 @@
 							else
 							{
 								std::ostringstream ostr;
-								ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+								ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 								CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 							}
 						}
@@ -512,7 +512,7 @@
 					else
 					{
 						std::ostringstream ostr;
-						ostr << "Error: not implemented, plase contact authors showing this message" << __FILE__ << "\t" << __LINE__;
+						ostr << "Error: not implemented, please contact authors showing this message" << __FILE__ << "\t" << __LINE__;
 						CCriticalErrorHandler::Inst().HandleCriticalError(ostr.str());
 					}
 				}
@@ -693,4 +693,4 @@
 
 #endif
 
-// ***** EOF
\ No newline at end of file
+// ***** EOF