Package: kmer / 0~20150903+r2013-6

Metadata

Package Version Patches format
kmer 0~20150903+r2013-6 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
allow freebsd build.patch | (download)

configure.sh | 24 12 + 12 - 0 !
1 file changed, 12 insertions(+), 12 deletions(-)

 try to fix building on kfreebsd
 Upstream's build system fails to detect GNU/kFreeBSD because its
 uname output is unique. This patch sets its uname to match the
 regular FreeBSD build parameters. It also sets the target build
 directory to always be "installdir" (rather than uname-arch). We
 only build for one architecture at a time, anyway, and this way,
 we don't have to figure out which system we're building on
 and mangle the uname string depending on whether we're Linux or kFreeBSD.
atac helper script paths.patch | (download)

atac-driver/atac.pl | 11 6 + 5 - 0 !
1 file changed, 6 insertions(+), 5 deletions(-)

 adjust paths for helper scripts to be found
 ATAC uses some generically named scripts (like "makeplots") that
 can't sensibly be placed in /usr/bin. We put them instead in
 /usr/lib/atac and adjust the driver script to be able to find them
 there.
atac readme.patch | (download)

README.atac | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix typo and adjust script name
 The debian package uses the executable "atac" rather than "atac.pl".
spelling.patch | (download)

libkmer/driver-existDB.C | 2 1 + 1 - 0 !
libutil/bitPackedFile.C | 2 1 + 1 - 0 !
libutil/palloc.c | 2 1 + 1 - 0 !
sim4dbutils/parseSNP.C | 2 1 + 1 - 0 !
4 files changed, 4 insertions(+), 4 deletions(-)

 fix spelling
linux cflags.patch | (download)

configure.sh | 18 9 + 9 - 0 !
1 file changed, 9 insertions(+), 9 deletions(-)

 use the same compile flags in all linux builds, and include -fpic
 atac .so were built without -fPIC on !amd64/ia64.
fix_wrong_evaluation_order.patch | (download)

atac-driver/libatac/atacMatchList.C | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 fix a piece of code that has unpredictable results
Bug-Debian: https://bugs.debian.org/906980