src/makefile | 37 20 + 17 - 0 !
1 file changed, 20 insertions(+), 17 deletions(-)

 propagate variables to makefile

makefile | 2 1 + 1 - 0 !
src/Alignment.cc | 4 0 + 4 - 0 !
src/GappedXdropAligner.cc | 4 0 + 4 - 0 !
src/GappedXdropAligner.hh | 2 0 + 2 - 0 !
src/GappedXdropAlignerDna.cc | 8 0 + 8 - 0 !
src/GappedXdropAlignerPssm.cc | 4 0 + 4 - 0 !
src/makefile | 32 16 + 16 - 0 !
src/mcf_simd.hh | 361 2 + 359 - 0 !
src/tantan.cc | 8 0 + 8 - 0 !
9 files changed, 19 insertions(+), 406 deletions(-)

 use the simd everywhere header only library

Always use the "AVX2" codepath as SIMDe will provide the non AVX2
equivalents automatically

bin/fasta-nr | 2 1 + 1 - 0 !
bin/last-dotplot | 2 1 + 1 - 0 !
bin/last-map-probs | 2 1 + 1 - 0 !
bin/last-postmask | 2 1 + 1 - 0 !
bin/last-train | 2 1 + 1 - 0 !
bin/maf-convert | 2 1 + 1 - 0 !
bin/maf-cut | 2 1 + 1 - 0 !
bin/maf-join | 2 1 + 1 - 0 !
bin/maf-swap | 2 1 + 1 - 0 !
9 files changed, 9 insertions(+), 9 deletions(-)

 fix shebang to the right location in python scripts