src/makefile | 25 14 + 11 - 0 !
1 file changed, 14 insertions(+), 11 deletions(-)

 propagate variables to makefile

makefile | 2 1 + 1 - 0 !
src/Alignment.cc | 4 0 + 4 - 0 !
src/GappedXdropAligner.cc | 4 0 + 4 - 0 !
src/GappedXdropAligner.hh | 2 0 + 2 - 0 !
src/GappedXdropAlignerDna.cc | 8 0 + 8 - 0 !
src/GappedXdropAlignerPssm.cc | 4 0 + 4 - 0 !
src/makefile | 16 8 + 8 - 0 !
src/mcf_simd.hh | 361 2 + 359 - 0 !
src/tantan.cc | 8 0 + 8 - 0 !
9 files changed, 11 insertions(+), 398 deletions(-)

 use the simd everywhere header only library

Always use the "AVX2" codepath as SIMDe will provide the non AVX2
equivalents automatically