Makefile.am | 2 1 + 1 - 0 !
configure.ac | 5 1 + 4 - 0 !
2 files changed, 2 insertions(+), 5 deletions(-)

 use debian packaged libbiosquid and libhmmer2

svmloc/Makefile.am | 7 2 + 5 - 0 !
svmloc/svmloc.cpp | 10 5 + 5 - 0 !
svmloc/svmloc.h | 2 1 + 1 - 0 !
3 files changed, 8 insertions(+), 11 deletions(-)

 use debian packaged libsvm

modhmm0.92b/core_algorithms_multialpha.c | 2 0 + 2 - 0 !
modhmm0.92b/debug_funcs.c | 448 0 + 448 - 0 !
modhmm0.92b/funcs.h | 13 0 + 13 - 0 !
modhmm0.92b/readhmm.c | 6 0 + 6 - 0 !
modhmm0.92b/readhmm_multialpha.c | 3 0 + 3 - 0 !
modhmm0.92b/std_funcs.c | 5 0 + 5 - 0 !
6 files changed, 477 deletions(-)

 drop unused debug functions

modhmm0.92b/debug_funcs.c | 6 4 + 2 - 0 !
modhmm0.92b/funcs.h | 3 3 + 0 - 0 !
2 files changed, 7 insertions(+), 2 deletions(-)

 fix implicit declaration
             Please note: Adding two prototypes directly to debug_funcs.c is hackish but
             some declarations in funcs.h are conflicting with the implementation ind
             debug_funcs.c thus it can't be simply included without furtherr changes
Bug-Debian: https://bugs.debian.org/1066475

modhmm0.92b/core_algorithms_multialpha.c | 32 16 + 16 - 0 !
modhmm0.92b/hmmsearch.c | 2 1 + 1 - 0 !
modhmm0.92b/readhmm.c | 4 2 + 2 - 0 !
modhmm0.92b/readhmm_multialpha.c | 4 2 + 2 - 0 !
modhmm0.92b/readseqs_multialpha.c | 2 1 + 1 - 0 !
modhmm0.92b/std_funcs.c | 6 3 + 3 - 0 !
modhmm0.92b/training_algorithms_multialpha.c | 32 16 + 16 - 0 !
7 files changed, 41 insertions(+), 41 deletions(-)

 fix numerous issues caught by gcc 14.