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|
Description: fixes spelling errors
This patch fixes spelling errors; lintian informed about "spelling-error-in-binary"
.
libsbml (5.10.0-1) UNRELEASED; urgency=medium
.
[Ivo Maintz]
* New upstream version
Author: Ivo Maintz <ivo@maintz.de>
---
Last-Update: 2014-04-16
--- libsbml-5.10.0.orig/OLD_NEWS.txt
+++ libsbml-5.10.0/OLD_NEWS.txt
@@ -1102,7 +1102,7 @@ Version 3.1.1 (released 2008-02-25)
Thanks to Chris Meyers for reporting this.
- Tracker issue #1880570.
- The previous fix for a piecewise without an otherwise statement
+ The previous fix for a piecewise without anotherwise statement
did not propagate for the use of piecewise within a lambda
function. This is now fixed and multiple tests included to catch
this and similar potential failures.
--- libsbml-5.10.0.orig/docs/src/libsbml-accessing.html
+++ libsbml-5.10.0/docs/src/libsbml-accessing.html
@@ -366,7 +366,7 @@ correctly. It may also mean that the re
installed library files or a directory in the hierarchy containing them are
such that you are not allowed to access the files. In that case, please
consult your systems administrator or (if you have administrator
-priviledges) reset the permissions yourself.
+privileges) reset the permissions yourself.
<h3><a class="anchor" name="accessing-matlab">MATLAB</a></h3>
--- libsbml-5.10.0.orig/src/bindings/csharp/csdoc.i
+++ libsbml-5.10.0/src/bindings/csharp/csdoc.i
@@ -246,7 +246,7 @@
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t) @endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -404,7 +404,7 @@
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t)@endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -4074,7 +4074,7 @@ s.setNotes(\'<body xmlns=\'http://www.w3
* Hierarchical Model Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other SBMLDocument with different package namespace declarations.
+ * another SBMLDocument with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
@@ -25953,7 +25953,7 @@ sp.setId(\'MySpecies\');
* This attribute is optional in SBML Level 2, with a default of @c
* false; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute\'s default value is @c false. SBML Level 1
@@ -49145,7 +49145,7 @@ else:
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
@@ -49469,7 +49469,7 @@ else:
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files-win/Reaction.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files-win/Reaction.cs
@@ -96,7 +96,7 @@ namespace libsbml {
* This attribute is optional in SBML Level 2, with a default of @c
* false; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute's default value is @c false. SBML Level 1
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files-win/SBMLError.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files-win/SBMLError.cs
@@ -4530,7 +4530,7 @@ namespace libsbml {
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
@@ -4854,7 +4854,7 @@ namespace libsbml {
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files-win/SBMLReader.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files-win/SBMLReader.cs
@@ -179,7 +179,7 @@ public class SBMLReader : IDisposable {
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t) @endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -340,7 +340,7 @@ public class SBMLReader : IDisposable {
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t)@endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files-win/SBase.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files-win/SBase.cs
@@ -2901,7 +2901,7 @@ s.setNotes('<body xmlns='http://www.w3.o
* Hierarchical Model Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other SBMLDocument with different package namespace declarations.
+ * another SBMLDocument with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files/Reaction.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files/Reaction.cs
@@ -96,7 +96,7 @@ namespace libsbmlcs {
* This attribute is optional in SBML Level 2, with a default of @c
* false; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute's default value is @c false. SBML Level 1
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files/SBMLError.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files/SBMLError.cs
@@ -4530,7 +4530,7 @@ namespace libsbmlcs {
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
@@ -4854,7 +4854,7 @@ namespace libsbmlcs {
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbmlcs.libsbml.CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files/SBMLReader.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files/SBMLReader.cs
@@ -179,7 +179,7 @@ public class SBMLReader : IDisposable {
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t) @endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -341,7 +341,7 @@ public class SBMLReader : IDisposable {
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t)@endif can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
--- libsbml-5.10.0.orig/src/bindings/csharp/csharp-files/SBase.cs
+++ libsbml-5.10.0/src/bindings/csharp/csharp-files/SBase.cs
@@ -2931,7 +2931,7 @@ s.setNotes('<body xmlns='http://www.w3.o
* Hierarchical Model Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other SBMLDocument with different package namespace declarations.
+ * another SBMLDocument with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
--- libsbml-5.10.0.orig/src/bindings/java/java-files/org/sbml/libsbml/Reaction.java
+++ libsbml-5.10.0/src/bindings/java/java-files/org/sbml/libsbml/Reaction.java
@@ -91,7 +91,7 @@ package org.sbml.libsbml;
* This attribute is optional in SBML Level 2, with a default of
* <code>false</code>; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute's default value is <code>false.</code> SBML Level 1
--- libsbml-5.10.0.orig/src/bindings/java/java-files/org/sbml/libsbml/SBMLError.java
+++ libsbml-5.10.0/src/bindings/java/java-files/org/sbml/libsbml/SBMLError.java
@@ -4438,7 +4438,7 @@ defined in SBML.
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>{@link libsbmlConstants#CompNoMultipleReferences CompNoMultipleReferences }</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
@@ -4762,7 +4762,7 @@ defined in SBML.
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>{@link libsbmlConstants#CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction }</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
--- libsbml-5.10.0.orig/src/bindings/java/java-files/org/sbml/libsbml/SBMLReader.java
+++ libsbml-5.10.0/src/bindings/java/java-files/org/sbml/libsbml/SBMLReader.java
@@ -193,7 +193,7 @@ public class SBMLReader {
* If the file <code>filename</code> could not be read, the file-reading error will
* appear first. The error code can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -288,7 +288,7 @@ public class SBMLReader {
* If the file <code>filename</code> could not be read, the file-reading error will
* appear first. The error code can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
--- libsbml-5.10.0.orig/src/bindings/java/java-files/org/sbml/libsbml/SBase.java
+++ libsbml-5.10.0/src/bindings/java/java-files/org/sbml/libsbml/SBase.java
@@ -2790,7 +2790,7 @@ appears in the documentation.
* Hierarchical {@link Model} Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other {@link SBMLDocument} with different package namespace declarations.
+ * another {@link SBMLDocument} with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
--- libsbml-5.10.0.orig/src/bindings/java/javadoc.i
+++ libsbml-5.10.0/src/bindings/java/javadoc.i
@@ -235,7 +235,7 @@ defined in SBML.
* If the file <code>filename</code> could not be read, the file-reading error will
* appear first. The error code can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -328,7 +328,7 @@ defined in SBML.
* If the file <code>filename</code> could not be read, the file-reading error will
* appear first. The error code can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -3882,7 +3882,7 @@ appears in the documentation.
* Hierarchical {@link Model} Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other {@link SBMLDocument} with different package namespace declarations.
+ * another {@link SBMLDocument} with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
@@ -25033,7 +25033,7 @@ attributes.</caption>
* This attribute is optional in SBML Level 2, with a default of
* <code>false</code>; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute\'s default value is <code>false.</code> SBML Level 1
@@ -48043,7 +48043,7 @@ defined in SBML.
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>{@link libsbmlConstants#CompNoMultipleReferences CompNoMultipleReferences }</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
@@ -48367,7 +48367,7 @@ defined in SBML.
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>{@link libsbmlConstants#CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction }</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
--- libsbml-5.10.0.orig/src/bindings/perl/LibSBML.pm
+++ libsbml-5.10.0/src/bindings/perl/LibSBML.pm
@@ -261,7 +261,7 @@ If the file C<filename> could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t) @endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -367,7 +367,7 @@ If the file C<filename> could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t)@endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -2835,7 +2835,7 @@ application read an SBML document contai
Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn from
-an other SBMLDocument with different package namespace declarations.
+another SBMLDocument with different package namespace declarations.
You could reconstruct the same namespaces in the in-memory model first,
but as a shortcut, you could also disable the package namespace on the
object being added. Here is a code example to help clarify this:
@@ -17001,7 +17001,7 @@ The Reaction object class has another bo
This attribute is optional in SBML Level 2, with a default of @c
false; it is mandatory in SBML Level 3 (with no default value). It
is used to indicate that a reaction occurs on a vastly faster time scale
-than others in a system. Readers are directed to the SBML Level 2
+thanothers in a system. Readers are directed to the SBML Level 2
Version 4 specification, which provides more detail about the
conditions under which a reaction can be considered to be fast in this
sense. The attribute's default value is C<false>. SBML Level 1
--- libsbml-5.10.0.orig/src/bindings/perl/LibSBML.pod
+++ libsbml-5.10.0/src/bindings/perl/LibSBML.pod
@@ -248,7 +248,7 @@ If the file C<filename> could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t) @endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -354,7 +354,7 @@ If the file C<filename> could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t)@endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -2822,7 +2822,7 @@ application read an SBML document contai
Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn from
-an other SBMLDocument with different package namespace declarations.
+another SBMLDocument with different package namespace declarations.
You could reconstruct the same namespaces in the in-memory model first,
but as a shortcut, you could also disable the package namespace on the
object being added. Here is a code example to help clarify this:
@@ -16988,7 +16988,7 @@ The Reaction object class has another bo
This attribute is optional in SBML Level 2, with a default of @c
false; it is mandatory in SBML Level 3 (with no default value). It
is used to indicate that a reaction occurs on a vastly faster time scale
-than others in a system. Readers are directed to the SBML Level 2
+thanothers in a system. Readers are directed to the SBML Level 2
Version 4 specification, which provides more detail about the
conditions under which a reaction can be considered to be fast in this
sense. The attribute's default value is C<false>. SBML Level 1
--- libsbml-5.10.0.orig/src/bindings/python/libsbml-doxygen.py
+++ libsbml-5.10.0/src/bindings/python/libsbml-doxygen.py
@@ -781,7 +781,7 @@ def readSBML(*args):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -1245,7 +1245,7 @@ class SBMLReader(_object):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -1329,7 +1329,7 @@ class SBMLReader(_object):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -4831,7 +4831,7 @@ class SBase(_object):
Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn from
- an other SBMLDocument with different package namespace declarations.
+ another SBMLDocument with different package namespace declarations.
You could reconstruct the same namespaces in the in-memory model first,
but as a shortcut, you could also disable the package namespace on the
object being added. Here is a code example to help clarify this:
@@ -26201,7 +26201,7 @@ class Reaction(SBase):
This attribute is optional in SBML Level 2, with a default of @c
false; it is mandatory in SBML Level 3 (with no default value). It
is used to indicate that a reaction occurs on a vastly faster time scale
- than others in a system. Readers are directed to the SBML Level 2
+ thanothers in a system. Readers are directed to the SBML Level 2
Version 4 specification, which provides more detail about the
conditions under which a reaction can be considered to be fast in this
sense. The attribute's default value is @c False. SBML Level 1
@@ -50681,7 +50681,7 @@ class SBMLError(XMLError):
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbml.CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
- <td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+ <td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
@@ -51005,7 +51005,7 @@ class SBMLError(XMLError):
<td class='s-na'>N</td>
<td class='s-error'>E</td></tr>
<tr><td><code>@link libsbml.CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
- <td> The performReplacementsAndConversions fuctions is deprecated. </td>
+ <td> The performReplacementsAndConversions functions is deprecated. </td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
<td class='s-na'>N</td>
--- libsbml-5.10.0.orig/src/bindings/python/libsbml.py
+++ libsbml-5.10.0/src/bindings/python/libsbml.py
@@ -782,7 +782,7 @@ def readSBML(*args):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -1209,7 +1209,7 @@ class SBMLReader(_object):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -1293,7 +1293,7 @@ class SBMLReader(_object):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -4255,7 +4255,7 @@ class SBase(_object):
SBML Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn
- from an other SBMLDocument with different package namespace
+ from another SBMLDocument with different package namespace
declarations. You could reconstruct the same namespaces in the in-
memory model first, but as a shortcut, you could also disable the
package namespace on the object being added. Here is a code example
@@ -44795,7 +44795,7 @@ class SBMLError(XMLError):
|libsbml.CompDeprecatedSBaseRefSpelling |The spelling 'sbaseRef' is deprecated |N |N |N |N |N |N |W |
|libsbml.CompSBaseRefMustReferenceObject |An SBaseRef must reference an object. |N |N |N |N |N |N |E |
|libsbml.CompSBaseRefMustReferenceOnlyOneObject |An SBaseRef must reference only one other object. |N |N |N |N |N |N |E |
- |libsbml.CompNoMultipleReferences |Objects may not be referenced by mutiple SBaseRef constructs. |N |N |N |N |N |N |E |
+ |libsbml.CompNoMultipleReferences |Objects may not be referenced by multiple SBaseRef constructs. |N |N |N |N |N |N |E |
|libsbml.CompPortMustReferenceObject |Port must reference an object |N |N |N |N |N |N |E |
|libsbml.CompPortMustReferenceOnlyOneObject |Port must reference only one other object. |N |N |N |N |N |N |E |
|libsbml.CompPortAllowedAttributes |Allowed attributes on a Port |N |N |N |N |N |N |E |
@@ -44831,7 +44831,7 @@ class SBMLError(XMLError):
|libsbml.CompFlatteningNotImplementedReqd |Flattening not implemented for required package. |N |N |N |N |N |N |W |
|libsbml.CompFlatteningWarning |Flattening reference may come from package. |N |N |N |N |N |N |W |
|libsbml.CompDeprecatedDeleteFunction |The performDeletions functions is deprecated. |N |N |N |N |N |N |E |
- |libsbml.CompDeprecatedReplaceFunction |The performReplacementsAndConversions fuctions is deprecated. |N |N |N |N |N |N |E |
+ |libsbml.CompDeprecatedReplaceFunction |The performReplacementsAndConversions functions is deprecated. |N |N |N |N |N |N |E |
|libsbml.CompDeletedReplacement |Element deleted before a subelement could be replaced. |N |N |N |N |N |N |E |
|libsbml.CompIdRefMayReferenceUnknownPackage |The 'comp:idRef' attribute must be the 'id' of a model element |N |N |N |N |N |N |W |
|libsbml.CompMetaIdRefMayReferenceUnknownPkg |The 'comp:metaIdRef' attribute must be the 'metaid' of a model element |N |N |N |N |N |N |W |
--- libsbml-5.10.0.orig/src/bindings/python/libsbml_wrap.cpp
+++ libsbml-5.10.0/src/bindings/python/libsbml_wrap.cpp
@@ -111129,7 +111129,7 @@ static PyMethodDef SwigMethods[] = {
"appear first. The error code can provide a clue about what happened.\n"
"For example, a file might be unreadable (either because it does not\n"
"actually exist or because the user does not have the necessary access\n"
- "priviledges to read it) or some sort of file operation error may have\n"
+ "privileges to read it) or some sort of file operation error may have\n"
"been reported by the underlying operating system. Callers can check\n"
"for these situations using a program fragment such as the following:\n"
"\n"
@@ -111207,7 +111207,7 @@ static PyMethodDef SwigMethods[] = {
"appear first. The error code can provide a clue about what happened.\n"
"For example, a file might be unreadable (either because it does not\n"
"actually exist or because the user does not have the necessary access\n"
- "priviledges to read it) or some sort of file operation error may have\n"
+ "privileges to read it) or some sort of file operation error may have\n"
"been reported by the underlying operating system. Callers can check\n"
"for these situations using a program fragment such as the following:\n"
"\n"
@@ -113545,7 +113545,7 @@ static PyMethodDef SwigMethods[] = {
"SBML Hierarchical Model Composition (“comp”) package, and\n"
"extracted parts of that model in order to construct a new model in\n"
"memory. The new, in-memory model will not accept a component drawn\n"
- "from an other SBMLDocument with different package namespace\n"
+ "from another SBMLDocument with different package namespace\n"
"declarations. You could reconstruct the same namespaces in the in-\n"
"memory model first, but as a shortcut, you could also disable the\n"
"package namespace on the object being added. Here is a code example\n"
--- libsbml-5.10.0.orig/src/bindings/python/local.i
+++ libsbml-5.10.0/src/bindings/python/local.i
@@ -592,7 +592,7 @@ SBMLReader::readSBML(const std::string&)
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -679,7 +679,7 @@ SBMLReader::readSBMLFromFile(const std::
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -777,7 +777,7 @@ def readSBML(*args):
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
- priviledges to read it) or some sort of file operation error may have
+ privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
--- libsbml-5.10.0.orig/src/bindings/python/pydoc-doxygen.i
+++ libsbml-5.10.0/src/bindings/python/pydoc-doxygen.i
@@ -215,7 +215,7 @@ If the file @p filename could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t) @endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -365,7 +365,7 @@ If the file @p filename could not be rea
appear first. The error code @if clike (a value drawn from the enumeration
#XMLErrorCode_t)@endif@~ can provide a clue about what happened. For example,
a file might be unreadable (either because it does not actually exist
-or because the user does not have the necessary access priviledges to
+or because the user does not have the necessary access privileges to
read it) or some sort of file operation error may have been reported
by the underlying operating system. Callers can check for these
situations using a program fragment such as the following:
@@ -3427,7 +3427,7 @@ application read an SBML document contai
Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn from
-an other SBMLDocument with different package namespace declarations.
+another SBMLDocument with different package namespace declarations.
You could reconstruct the same namespaces in the in-memory model first,
but as a shortcut, you could also disable the package namespace on the
object being added. Here is a code example to help clarify this:
@@ -22938,7 +22938,7 @@ The Reaction object class has another bo
This attribute is optional in SBML Level 2, with a default of @c
false; it is mandatory in SBML Level 3 (with no default value). It
is used to indicate that a reaction occurs on a vastly faster time scale
-than others in a system. Readers are directed to the SBML Level 2
+thanothers in a system. Readers are directed to the SBML Level 2
Version 4 specification, which provides more detail about the
conditions under which a reaction can be considered to be fast in this
sense. The attribute\'s default value is @c False. SBML Level 1
@@ -44129,7 +44129,7 @@ from libSBML core.@endif
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>@link libsbml.CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
@@ -44453,7 +44453,7 @@ from libSBML core.@endif
<td class=\'s-na\'>N</td>
<td class=\'s-error\'>E</td></tr>
<tr><td><code>@link libsbml.CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
<td class=\'s-na\'>N</td>
--- libsbml-5.10.0.orig/src/bindings/python/pydoc-normal.i
+++ libsbml-5.10.0/src/bindings/python/pydoc-normal.i
@@ -187,7 +187,7 @@ If the file 'filename' could not be read
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
-priviledges to read it) or some sort of file operation error may have
+privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -264,7 +264,7 @@ If the file 'filename' could not be read
appear first. The error code can provide a clue about what happened.
For example, a file might be unreadable (either because it does not
actually exist or because the user does not have the necessary access
-priviledges to read it) or some sort of file operation error may have
+privileges to read it) or some sort of file operation error may have
been reported by the underlying operating system. Callers can check
for these situations using a program fragment such as the following:
@@ -2693,7 +2693,7 @@ application read an SBML document contai
SBML Hierarchical Model Composition (“comp”) package, and
extracted parts of that model in order to construct a new model in
memory. The new, in-memory model will not accept a component drawn
-from an other SBMLDocument with different package namespace
+from another SBMLDocument with different package namespace
declarations. You could reconstruct the same namespaces in the in-
memory model first, but as a shortcut, you could also disable the
package namespace on the object being added. Here is a code example
@@ -36352,7 +36352,7 @@ If the name of a code does not begin wit
|libsbml.CompDeprecatedSBaseRefSpelling |The spelling 'sbaseRef' is deprecated |N |N |N |N |N |N |W |
|libsbml.CompSBaseRefMustReferenceObject |An SBaseRef must reference an object. |N |N |N |N |N |N |E |
|libsbml.CompSBaseRefMustReferenceOnlyOneObject |An SBaseRef must reference only one other object. |N |N |N |N |N |N |E |
- |libsbml.CompNoMultipleReferences |Objects may not be referenced by mutiple SBaseRef constructs. |N |N |N |N |N |N |E |
+ |libsbml.CompNoMultipleReferences |Objects may not be referenced by multiple SBaseRef constructs. |N |N |N |N |N |N |E |
|libsbml.CompPortMustReferenceObject |Port must reference an object |N |N |N |N |N |N |E |
|libsbml.CompPortMustReferenceOnlyOneObject |Port must reference only one other object. |N |N |N |N |N |N |E |
|libsbml.CompPortAllowedAttributes |Allowed attributes on a Port |N |N |N |N |N |N |E |
@@ -36388,7 +36388,7 @@ If the name of a code does not begin wit
|libsbml.CompFlatteningNotImplementedReqd |Flattening not implemented for required package. |N |N |N |N |N |N |W |
|libsbml.CompFlatteningWarning |Flattening reference may come from package. |N |N |N |N |N |N |W |
|libsbml.CompDeprecatedDeleteFunction |The performDeletions functions is deprecated. |N |N |N |N |N |N |E |
- |libsbml.CompDeprecatedReplaceFunction |The performReplacementsAndConversions fuctions is deprecated. |N |N |N |N |N |N |E |
+ |libsbml.CompDeprecatedReplaceFunction |The performReplacementsAndConversions functions is deprecated. |N |N |N |N |N |N |E |
|libsbml.CompDeletedReplacement |Element deleted before a subelement could be replaced. |N |N |N |N |N |N |E |
|libsbml.CompIdRefMayReferenceUnknownPackage |The 'comp:idRef' attribute must be the 'id' of a model element |N |N |N |N |N |N |W |
|libsbml.CompMetaIdRefMayReferenceUnknownPkg |The 'comp:metaIdRef' attribute must be the 'metaid' of a model element |N |N |N |N |N |N |W |
--- libsbml-5.10.0.orig/src/sbml/Reaction.h
+++ libsbml-5.10.0/src/sbml/Reaction.h
@@ -113,7 +113,7 @@
* This attribute is optional in SBML Level 2, with a default of @c
* false; it is mandatory in SBML Level 3 (with no default value). It
* is used to indicate that a reaction occurs on a vastly faster time scale
- * than others in a system. Readers are directed to the SBML Level 2
+ * thanothers in a system. Readers are directed to the SBML Level 2
* Version 4 specification, which provides more detail about the
* conditions under which a reaction can be considered to be fast in this
* sense. The attribute's default value is @c false. SBML Level 1
--- libsbml-5.10.0.orig/src/sbml/SBMLReader.cpp
+++ libsbml-5.10.0/src/sbml/SBMLReader.cpp
@@ -238,7 +238,7 @@ SBMLReader::readInternal (const char* co
if (stream.isError())
{
// If we encountered an error, some parsers will report it sooner
- // than others. Unfortunately, those that fail sooner do it in an
+ // thanothers. Unfortunately, those that fail sooner do it in an
// opaque call, so we can't change the behavior. Since we don't want
// different parsers to report different validation errors, we bring
// all parsers back to the same point.
--- libsbml-5.10.0.orig/src/sbml/SBMLReader.h
+++ libsbml-5.10.0/src/sbml/SBMLReader.h
@@ -185,7 +185,7 @@ public:
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t) @endif@~ can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
@@ -306,7 +306,7 @@ public:
* appear first. The error code @if clike (a value drawn from the enumeration
* #XMLErrorCode_t)@endif@~ can provide a clue about what happened. For example,
* a file might be unreadable (either because it does not actually exist
- * or because the user does not have the necessary access priviledges to
+ * or because the user does not have the necessary access privileges to
* read it) or some sort of file operation error may have been reported
* by the underlying operating system. Callers can check for these
* situations using a program fragment such as the following:
--- libsbml-5.10.0.orig/src/sbml/SBase.h
+++ libsbml-5.10.0/src/sbml/SBase.h
@@ -2724,7 +2724,7 @@ s.setNotes("<body xmlns='http://www.w3.o
* Hierarchical Model Composition (“comp”) package, and
* extracted parts of that model in order to construct a new model in
* memory. The new, in-memory model will not accept a component drawn from
- * an other SBMLDocument with different package namespace declarations.
+ * another SBMLDocument with different package namespace declarations.
* You could reconstruct the same namespaces in the in-memory model first,
* but as a shortcut, you could also disable the package namespace on the
* object being added. Here is a code example to help clarify this:
--- libsbml-5.10.0.orig/src/sbml/common/common-documentation.h
+++ libsbml-5.10.0/src/sbml/common/common-documentation.h
@@ -5414,7 +5414,7 @@ e><a href="libsbml.html#parseL3Formula(j
<td class="s-na">N</td>
<td class="s-error">E</td></tr>
<tr><td><code>@link CompSBMLErrorCode_t#CompNoMultipleReferences CompNoMultipleReferences @endlink</code></td>
-<td> Objects may not be referenced by mutiple SBaseRef constructs. </td>
+<td> Objects may not be referenced by multiple SBaseRef constructs. </td>
<td class="s-na">N</td>
<td class="s-na">N</td>
<td class="s-na">N</td>
@@ -5738,7 +5738,7 @@ e><a href="libsbml.html#parseL3Formula(j
<td class="s-na">N</td>
<td class="s-error">E</td></tr>
<tr><td><code>@link CompSBMLErrorCode_t#CompDeprecatedReplaceFunction CompDeprecatedReplaceFunction @endlink</code></td>
-<td> The performReplacementsAndConversions fuctions is deprecated. </td>
+<td> The performReplacementsAndConversions functions is deprecated. </td>
<td class="s-na">N</td>
<td class="s-na">N</td>
<td class="s-na">N</td>
--- libsbml-5.10.0.orig/src/sbml/packages/comp/validator/CompSBMLError.h
+++ libsbml-5.10.0/src/sbml/packages/comp/validator/CompSBMLError.h
@@ -124,7 +124,7 @@ typedef enum
, CompDeprecatedSBaseRefSpelling = 1020711 /*!< The spelling 'sbaseRef' is deprecated */
, CompSBaseRefMustReferenceObject = 1020712 /*!< An SBaseRef must reference an object. */
, CompSBaseRefMustReferenceOnlyOneObject= 1020713 /*!< An SBaseRef must reference only one other object. */
-, CompNoMultipleReferences = 1020714 /*!< Objects may not be referenced by mutiple SBaseRef constructs. */
+, CompNoMultipleReferences = 1020714 /*!< Objects may not be referenced by multiple SBaseRef constructs. */
, CompPortMustReferenceObject = 1020801 /*!< Port must reference an object */
, CompPortMustReferenceOnlyOneObject = 1020802 /*!< Port must reference only one other object. */
@@ -167,7 +167,7 @@ typedef enum
, CompFlatteningNotImplementedReqd = 1090110 /*!< Flattening not implemented for required package. */
, CompFlatteningWarning = 1090111 /*!< Flattening reference may come from package. */
, CompDeprecatedDeleteFunction = 1090112 /*!< The performDeletions functions is deprecated. */
-, CompDeprecatedReplaceFunction = 1090113 /*!< The performReplacementsAndConversions fuctions is deprecated. */
+, CompDeprecatedReplaceFunction = 1090113 /*!< The performReplacementsAndConversions functions is deprecated. */
, CompDeletedReplacement = 1090114 /*!< Element deleted before a subelement could be replaced. */
, CompIdRefMayReferenceUnknownPackage = 1090115 /*!< The 'comp:idRef' attribute must be the 'id' of a model element */
--- libsbml-5.10.0.orig/src/sbml/packages/comp/validator/CompSBMLErrorTable.h
+++ libsbml-5.10.0/src/sbml/packages/comp/validator/CompSBMLErrorTable.h
@@ -949,7 +949,7 @@ static const packageErrorTableEntry comp
// 1020714
{ CompNoMultipleReferences,
- "Objects may not be referenced by mutiple SBaseRef constructs.",
+ "Objects may not be referenced by multiple SBaseRef constructs.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Any one SBML object may only be referenced in one of the following ways: "
@@ -1410,7 +1410,7 @@ static const packageErrorTableEntry comp
// 1090113
{ CompDeprecatedReplaceFunction,
- "The performReplacementsAndConversions fuctions is deprecated.",
+ "The performReplacementsAndConversions functions is deprecated.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The software used to process this hierarchical model used the deprecated "
|
