Package: libsbml / 5.16.0+dfsg-2

Metadata

Package Version Patches format
libsbml 5.16.0+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
perl installdirs.patch | (download)

src/bindings/perl/CMakeLists.txt | 8 7 + 1 - 0 !
src/bindings/perl/Makefile.PL.in | 1 0 + 1 - 0 !
2 files changed, 7 insertions(+), 2 deletions(-)

 install perl modules in correct dir


hardening.patch | (download)

config/makefile-common-actions.mk | 9 9 + 0 - 0 !
src/bindings/matlab/Makefile.in | 2 1 + 1 - 0 !
src/bindings/perl/Makefile.in | 1 1 + 0 - 0 !
3 files changed, 11 insertions(+), 1 deletion(-)

 hardening
 .
 libsbml (5.11.0+dfsg-1sid1) UNRELEASED; urgency=medium
 .
   * update from upstream
doxygen.patch | (download)

docs/CMakeLists.txt | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix a wrong file name
 docs/CmakeLists.txt contains a wrong path to right-arrow-2x.png
 .
 libsbml (5.11.0+dfsg-1sid1) UNRELEASED; urgency=medium
 .
   * update from upstream
spelling.patch | (download)

docs/src/common-text/libsbml-import-for-python.html | 2 1 + 1 - 0 !
src/bindings/java/java-files/org/sbml/libsbml/ASTNode.java | 2 1 + 1 - 0 !
src/bindings/java/java-files/org/sbml/libsbml/SBMLError.java | 4 2 + 2 - 0 !
src/bindings/java/java-files/org/sbml/libsbml/SBase.java | 2 1 + 1 - 0 !
src/bindings/perl/LibSBML.pm | 4 2 + 2 - 0 !
src/bindings/perl/LibSBML.pod | 4 2 + 2 - 0 !
src/bindings/python/libsbml.py | 8 4 + 4 - 0 !
src/bindings/python/local.i | 6 3 + 3 - 0 !
src/sbml/SBase.h | 2 1 + 1 - 0 !
src/sbml/common/common-sbmlerror-codes.h | 4 2 + 2 - 0 !
src/sbml/math/ASTNode.h | 2 1 + 1 - 0 !
src/sbml/packages/comp/validator/CompSBMLError.h | 4 2 + 2 - 0 !
src/sbml/packages/comp/validator/CompSBMLErrorTable.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/ColorDefinition.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/ColorDefinition.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/Ellipse.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/GlobalStyle.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GlobalStyle.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GradientBase.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GradientBase.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GradientStop.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GradientStop.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/GraphicalPrimitive1D.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp | 6 3 + 3 - 0 !
src/sbml/packages/render/sbml/GraphicalPrimitive2D.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Image.cpp | 10 5 + 5 - 0 !
src/sbml/packages/render/sbml/Image.h | 10 5 + 5 - 0 !
src/sbml/packages/render/sbml/LineEnding.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/LineEnding.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/LinearGradient.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/LinearGradient.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/ListOfCurveElements.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/ListOfCurveElements.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/LocalStyle.cpp | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/LocalStyle.h | 4 2 + 2 - 0 !
src/sbml/packages/render/sbml/Polygon.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Polygon.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RadialGradient.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RadialGradient.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Rectangle.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Rectangle.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderCubicBezier.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderCubicBezier.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderCurve.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderCurve.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderGroup.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderGroup.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderInformationBase.cpp | 8 4 + 4 - 0 !
src/sbml/packages/render/sbml/RenderPoint.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/RenderPoint.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Style.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Style.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Text.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Text.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Transformation.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Transformation.h | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Transformation2D.cpp | 2 1 + 1 - 0 !
src/sbml/packages/render/sbml/Transformation2D.h | 2 1 + 1 - 0 !
59 files changed, 95 insertions(+), 95 deletions(-)

 fixes spelling errors
 This patch fixes spelling errors; lintian informed about "spelling-error-in-binary"
 .
 libsbml (5.11.0+dfsg-1sid1) UNRELEASED; urgency=medium
 .
   * update from upstream
swig 3.x.patch | (download)

src/bindings/csharp/local-packages-arrays.i | 8 4 + 4 - 0 !
src/bindings/csharp/local-packages-groups.i | 8 4 + 4 - 0 !
src/bindings/csharp/local-packages-layout.i | 8 4 + 4 - 0 !
src/bindings/csharp/local-packages-render.i | 8 4 + 4 - 0 !
src/bindings/csharp/local-packages-req.i | 8 4 + 4 - 0 !
src/bindings/csharp/local-packages-spatial.i | 8 4 + 4 - 0 !
src/bindings/csharp/local.i | 90 45 + 45 - 0 !
7 files changed, 69 insertions(+), 69 deletions(-)

 build with with swig 3.x


mips compile with O1.patch | (download)

src/bindings/perl/CMakeLists.txt | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

 package libsbml ftbfs on mipsel
 We have successfully built libsbml using -O1 optimization level.
 -O1 is used for mips/mipsel, for critical part of package.
 .
 With this patch we was able to build package on lemote loongson 3a.


javadoc_java9.patch | (download)

docs/CMakeLists.txt | 4 0 + 4 - 0 !
1 file changed, 4 deletions(-)

 work around javadoc issue with java 9
  See https://lists.debian.org/debian-java/2018/03/msg00023.html
Bug-Debian: https://bugs.debian.org/893298