Package: libseqlib / 1.1.2+dfsg-3
Metadata
Package | Version | Patches format |
---|---|---|
libseqlib | 1.1.2+dfsg-3 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
use_debian_packaged_libs.patch | (download) |
Makefile.am |
4 2 + 2 - 0 ! |
skip subdirs in favour of debian packaged development libraries and do not use broken install target |
adapt_to_debian_fermi lite.patch | (download) |
SeqLib/BFC.h |
2 1 + 1 - 0 ! |
in debian's fermi-lite 0.1-3 a name space pollution with |
fix_fermi lite_usage.patch | (download) |
SeqLib/BFC.h |
4 2 + 2 - 0 ! |
upstream tries to include a header file bfc.h which can not be found in fermi-lite. Just skip this. . Also use system installed libfml-dev header file. |
fix_htslib_usage.patch | (download) |
SeqLib/BamHeader.h |
8 4 + 4 - 0 ! |
use header files from libhts-dev |
fml_include_path.patch | (download) |
SeqLib/FermiAssembler.h |
6 3 + 3 - 0 ! |
make sure header files will be found in /usr/include/fml |
dynamic_lib.patch | (download) |
configure.ac |
6 6 + 0 - 0 ! |
create dynamic library |
use_debian_packaged_jsoncpp.patch | (download) |
seq_test/Makefile.am |
2 1 + 1 - 0 ! |
do not use code copy of jsoncpp |
use_debian_packaged_ssw.patch | (download) |
seq_test/Makefile.am |
2 1 + 1 - 0 ! |
do not use code copy of libssw |
pkg config.patch | (download) |
Makefile.am |
4 4 + 0 - 0 ! |
add pkg-config file |
use_private_htslib_headers.patch | (download) |
SeqLib/BamWalker.h |
4 2 + 2 - 0 ! |
hack around improper use of private files of htslib |