Package: libvcflib | Debian Sources

Package: libvcflib / 1.0.2+dfsg-2

Metadata

Package	Version	Patches format
libvcflib	1.0.2+dfsg-2	3.0 (quilt)

Patch series

view the series file

Patch	File delta	Description
spelling \| (download)	README.md \| 2 1 + 1 - 0 ! doc/popStats.md \| 2 1 + 1 - 0 ! doc/vcflib.md \| 2 1 + 1 - 0 ! doc/vcfuniq.md \| 2 1 + 1 - 0 ! man/popStats.1 \| 2 1 + 1 - 0 ! man/vcflib.1 \| 2 1 + 1 - 0 ! man/vcfuniq.1 \| 2 1 + 1 - 0 ! src/popStats.cpp \| 2 1 + 1 - 0 ! src/vcfuniq.cpp \| 2 1 + 1 - 0 ! 9 files changed, 9 insertions(+), 9 deletions(-)	fix typos
no_fsom \| (download)	CMakeLists.txt \| 1 0 + 1 - 0 ! 1 file changed, 1 deletion(-)	fsom is not used
use_debian_packaged_smithwaterman.patch \| (download)	CMakeLists.txt \| 12 5 + 7 - 0 ! src/Variant.h \| 2 1 + 1 - 0 ! 2 files changed, 6 insertions(+), 8 deletions(-)	use debian packaged libsmithwaterman
use_debian_packaged_fastahack.patch \| (download)	CMakeLists.txt \| 5 2 + 3 - 0 ! src/Variant.h \| 2 1 + 1 - 0 ! src/vcf2dag.cpp \| 2 1 + 1 - 0 ! src/vcf2fasta.cpp \| 2 1 + 1 - 0 ! src/vcfcheck.cpp \| 2 1 + 1 - 0 ! src/vcfentropy.cpp \| 2 1 + 1 - 0 ! src/vcfevenregions.cpp \| 2 1 + 1 - 0 ! src/vcfgeno2haplo.cpp \| 2 1 + 1 - 0 ! src/vcfinfosummarize.cpp \| 2 1 + 1 - 0 ! src/vcfintersect.cpp \| 2 1 + 1 - 0 ! src/vcfleftalign.cpp \| 2 1 + 1 - 0 ! src/vcfnormalizesvs.cpp \| 2 1 + 1 - 0 ! src/vcfprimers.cpp \| 2 1 + 1 - 0 ! src/vcfremap.cpp \| 2 1 + 1 - 0 ! src/vcfroc.cpp \| 2 1 + 1 - 0 ! src/vcfsample2info.cpp \| 2 1 + 1 - 0 ! 16 files changed, 17 insertions(+), 18 deletions(-)	use debian packaged libfastahack (and libdisorder)
use_debian_packaged_libssw.patch \| (download)	CMakeLists.txt \| 3 1 + 2 - 0 ! src/Variant.h \| 2 1 + 1 - 0 ! 2 files changed, 2 insertions(+), 3 deletions(-)	use debian packaged libssw (while its not clear why two implementations of Smith-Waterman are needed at all)
shared_lib.patch \| (download)	CMakeLists.txt \| 6 5 + 1 - 0 ! 1 file changed, 5 insertions(+), 1 deletion(-)	create shared lib instead of static
pkg config.patch \| (download)	libvcflib.pc \| 12 12 + 0 - 0 ! 1 file changed, 12 insertions(+)	add pkg-config file to simplify building of freebayes
hardening flags \| (download)	filevercmp/Makefile \| 4 2 + 2 - 0 ! intervaltree/Makefile \| 4 2 + 2 - 0 ! multichoose/Makefile \| 8 4 + 4 - 0 ! 3 files changed, 8 insertions(+), 8 deletions(-)	pass cppflags
tabix_linking \| (download)	CMakeLists.txt \| 1 1 + 0 - 0 ! 1 file changed, 1 insertion(+)	link against tabixpp
tests \| (download)	test/Makefile \| 13 4 + 9 - 0 ! 1 file changed, 4 insertions(+), 9 deletions(-)	use packaged gtest and update paths

1