Package: lumpy-sv | Debian Sources

Package: lumpy-sv / 0.3.1+dfsg-5

Package	Version	Patches format
lumpy-sv	0.3.1+dfsg-5	3.0 (quilt)

Patch	File delta	Description
use_debian_packaged_libs.patch \| (download)	Makefile \| 19 8 + 11 - 0 ! src/filter/Makefile \| 2 1 + 1 - 0 ! src/lumpy/Makefile \| 34 16 + 18 - 0 ! src/utils/BamTools-Ancillary/Makefile \| 5 2 + 3 - 0 ! src/utils/BlockedIntervals/Makefile \| 7 3 + 4 - 0 ! src/utils/bedFile/Makefile \| 5 2 + 3 - 0 ! src/utils/bedGraphFile/Makefile \| 2 1 + 1 - 0 ! src/utils/genomeFile/Makefile \| 2 1 + 1 - 0 ! src/utils/tabFile/Makefile \| 5 2 + 3 - 0 ! 9 files changed, 36 insertions(+), 45 deletions(-)	use debian packaged libraries Please note: lumpy-sv contains a code copy of bedtools. Unfortunately bedtools does not have a development library so its hard to replace this code copy here.
lumpyexpress.config.patch \| (download)	scripts/lumpyexpress \| 18 9 + 9 - 0 ! 1 file changed, 9 insertions(+), 9 deletions(-)	adapt paths to debian locations
fix_shebang.patch \| (download)	lumpy_tests/orig/bp_pesr.sh \| 2 1 + 1 - 0 ! lumpy_tests/orig/bp_sr.sh \| 2 1 + 1 - 0 ! test/bp_pe.sh \| 2 1 + 1 - 0 ! test/bp_pe_pl.sh \| 2 1 + 1 - 0 ! test/bp_pesr.sh \| 2 1 + 1 - 0 ! test/bp_pesr_pl.sh \| 2 1 + 1 - 0 ! test/bp_sr.sh \| 2 1 + 1 - 0 ! 7 files changed, 7 insertions(+), 7 deletions(-)	remove additional hash sign