| Patch |
File delta |
Description |
| use_debian_libs | (download) |
mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/NativeInt128.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/NativeInt16.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/NativeInt64.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/NativeInt8.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Abundance.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/IHistogram.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp |
2 1 + 1 - 0 !
mapsembler2_extremities/thirdparty/gatb-core/thirdparty/CMakeLists.txt |
42 0 + 42 - 0 !
11 files changed, 10 insertions(+), 52 deletions(-) |
use debian libs instead of embedded one
|
| run_pipeline | (download) |
run_mapsembler2_pipeline.sh |
20 10 + 10 - 0 !
1 file changed, 10 insertions(+), 10 deletions(-) |
use tools in path instead of local dirs as upstream
Last-Updated: 2014-08-20
|
| add_hardening | (download) |
kissreads/Makefile |
4 4 + 0 - 0 !
kissreads_graph/makefile |
5 4 + 1 - 0 !
mapsembler2_extend/makefile |
7 6 + 1 - 0 !
mapsembler2_extremities/CMakeLists.txt |
1 1 + 0 - 0 !
4 files changed, 15 insertions(+), 2 deletions(-) |
add hardening
|
| skip_mphe | (download) |
mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt |
1 1 + 0 - 0 !
1 file changed, 1 insertion(+) |
mphe uses sse which is not available on all archs
Disable in makefile the use of this lib as not mandatory
|
| gcc 5.patch | (download) |
mapsembler2_extend/mapsembler_extend.cpp |
4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-) |
fix type of prefix_trashable since gcc-5 is picky about it
|
| libgomp.patch | (download) |
kissreads/Makefile |
4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-) |
add missing -lgomp
|
| spelling.patch | (download) |
kissreads_graph/KissReadsGraph.cpp |
2 1 + 1 - 0 !
mapsembler2_extend/IterativeExtensions.cpp |
4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-) |
fix spelling
|
