Makefile | 10 5 + 5 - 0 !
1 file changed, 5 insertions(+), 5 deletions(-)

 propagate hardening options

tex/bioinfo.cls | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 natbib style is only for non-profit use

Makefile | 31 8 + 23 - 0 !
ksw2_extd2_sse.c | 91 7 + 84 - 0 !
ksw2_exts2_sse.c | 81 5 + 76 - 0 !
ksw2_extz2_sse.c | 57 5 + 52 - 0 !
ksw2_ll_sse.c | 3 2 + 1 - 0 !
5 files changed, 27 insertions(+), 236 deletions(-)

 add support for more architectures

using the SIMD Everywhere library

Makefile | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

---

setup.py | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 add libminimap to python library
 FIXME: seems extra_link_args and extra_objects are ignored both

setup.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 only pass -msse4.1 to the compiler on amd64