Package: mmseqs2 / 12-113e3+ds-3

Metadata

Package Version Patches format
mmseqs2 12-113e3+ds-3 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
spelling | (download)

data/workflow/searchslicedtargetprofile.sh | 2 1 + 1 - 0 !
src/MMseqsBase.cpp | 2 1 + 1 - 0 !
src/commons/DBReader.cpp | 2 1 + 1 - 0 !
src/commons/Parameters.cpp | 18 9 + 9 - 0 !
src/commons/ProfileStates.cpp | 2 1 + 1 - 0 !
src/taxonomy/aggregatetax.cpp | 2 1 + 1 - 0 !
6 files changed, 14 insertions(+), 14 deletions(-)

 spelling typos fixes
simde_tweak | (download)

src/commons/Util.cpp | 33 17 + 16 - 0 !
1 file changed, 17 insertions(+), 16 deletions(-)

 work around simde native_aliases issue
fix_tests.patch | (download)

src/test/TestAlignmentPerformance.cpp | 2 1 + 1 - 0 !
src/test/TestBestAlphabet.cpp | 6 3 + 3 - 0 !
src/test/TestDBReader.cpp | 6 3 + 3 - 0 !
src/test/TestDBReaderIndexSerialization.cpp | 2 1 + 1 - 0 !
src/test/TestDBReaderZstd.cpp | 6 4 + 2 - 0 !
src/test/TestIndexTable.cpp | 6 1 + 5 - 0 !
src/test/TestScoreMatrixSerialization.cpp | 6 5 + 1 - 0 !
7 files changed, 18 insertions(+), 16 deletions(-)

 fix some of the test src files to work in autopkgtest
 as some of the tests do not work as the paths have either been hardcoded or SIGSEGV is thrown
fix_util_installation.patch | (download)

util/CMakeLists.txt | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

 prevent cmake from installing util/
 We handle this within *.installs ourselves
use_system_zstd.patch | (download)

CMakeLists.txt | 24 12 + 12 - 0 !
src/CMakeLists.txt | 2 1 + 1 - 0 !
2 files changed, 13 insertions(+), 13 deletions(-)

 use libzstd-dev instead of that in lib
use_system_gzstream.patch | (download)

CMakeLists.txt | 1 0 + 1 - 0 !
src/CMakeLists.txt | 2 2 + 0 - 0 !
2 files changed, 2 insertions(+), 1 deletion(-)

 we use libgzstream-dev instead of that in lib