Package: mothur / 1.33.3+dfsg-2

Metadata

Package Version Patches format
mothur 1.33.3+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
makefile.patch | (download)

makefile | 11 7 + 4 - 0 !
1 file changed, 7 insertions(+), 4 deletions(-)

---
no_lcurses.patch | (download)

makefile | 3 1 + 2 - 0 !
1 file changed, 1 insertion(+), 2 deletions(-)

---
drop_sse_option.patch | (download)

uchime_src/mk | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix for ftbfs: cc1plus: error: unrecognized command line option '-msse2'

catchall_fix.patch | (download)

catchallcommand.cpp | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

---
build_without_tty.patch | (download)

uchime_src/mk | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

---
uchime_link_dynamically | (download)

uchime_src/mk | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

---
find_pat_files | (download)

sffmultiplecommand.cpp | 6 3 + 3 - 0 !
shhhercommand.cpp | 12 6 + 6 - 0 !
2 files changed, 9 insertions(+), 9 deletions(-)

 mothur ships with some .pat files which are needed by a couple of commands.
 Default behaviour is to fall back to looking in the exec dir, which makes
 no sense in a package, so redirect it.


uchime_hardening.patch | (download)

makefile | 4 3 + 1 - 0 !
1 file changed, 3 insertions(+), 1 deletion(-)

 propagate hardening options to uchime


spelling.patch | (download)

getcurrentcommand.cpp | 2 1 + 1 - 0 !
matrixoutputcommand.cpp | 2 1 + 1 - 0 !
mgclustercommand.cpp | 2 1 + 1 - 0 !
phylotypecommand.cpp | 2 1 + 1 - 0 !
screenseqscommand.cpp | 2 1 + 1 - 0 !
setcurrentcommand.cpp | 2 1 + 1 - 0 !
sffmultiplecommand.cpp | 2 1 + 1 - 0 !
treegroupscommand.cpp | 2 1 + 1 - 0 !
trimseqscommand.cpp | 2 1 + 1 - 0 !
9 files changed, 9 insertions(+), 9 deletions(-)

 some spelling corrections
 Note: There are similar spelling problems in comments inside
 the code that are not fixed by this patch