1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
|
Author: Andreas Tille <tille@debian.org>
Last-Update: Wed, 24 Mar 2010 17:10:43 +0000
Bug-Debian: http://bugs.debian.org/575105
Description: Make sure scripts will use the installation path instead of
the temporary build path
--- MUMmer3.22.orig/scripts/Makefile
+++ MUMmer3.22/scripts/Makefile
@@ -4,14 +4,19 @@
ifndef BIN_DIR
BIN_DIR := $(CURDIR)
endif
+ifndef INSTALL_BIN_DIR
+FINAL_BIN_DIR := $(BIN_DIR)
+endif
ifndef AUX_BIN_DIR
AUX_BIN_DIR := $(CURDIR)
endif
+ifndef INSTALL_AUX_BIN_DIR
+FINAL_AUX_BIN_DIR := $(BIN_DIR)
+endif
ifndef SCRIPT_DIR
SCRIPT_DIR := $(CURDIR)
endif
-SCRIPT_DIR := $(CURDIR)
SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
CSH := $(filter /%,$(shell /bin/sh -c 'type csh'))
PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
@@ -35,59 +40,52 @@
#-- not so PHONY rules --#
-exact-tandems: exact-tandems.csh
- $(SED) -e 's?__CSH_PATH?$(CSH)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
- exact-tandems.csh > $(BIN_DIR)/exact-tandems
+exact-tandems: ../debian/sh-replacement-scripts/exact-tandems
+ cp -a $^ $(BIN_DIR)
chmod 755 $(BIN_DIR)/exact-tandems
mapview: mapview.pl
$(SED) -e 's?__PERL_PATH?$(PERL)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
+ -e 's?__SCRIPT_DIR?$(FINAL_SCRIPT_DIR)?g' \
mapview.pl > $(BIN_DIR)/mapview
chmod 755 $(BIN_DIR)/mapview
mummerplot: mummerplot.pl Foundation.pm
$(SED) -e 's?__PERL_PATH?$(PERL)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
+ -e 's?__SCRIPT_DIR?$(FINAL_SCRIPT_DIR)?g' \
+ -e 's?__BIN_DIR?$(FINAL_BIN_DIR)?g' \
mummerplot.pl > $(BIN_DIR)/mummerplot
chmod 755 $(BIN_DIR)/mummerplot
dnadiff: dnadiff.pl Foundation.pm
$(SED) -e 's?__PERL_PATH?$(PERL)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
+ -e 's?__SCRIPT_DIR?$(FINAL_SCRIPT_DIR)?g' \
+ -e 's?__BIN_DIR?$(FINAL_BIN_DIR)?g' \
dnadiff.pl > $(BIN_DIR)/dnadiff
chmod 755 $(BIN_DIR)/dnadiff
nucmer: nucmer.pl Foundation.pm
$(SED) -e 's?__PERL_PATH?$(PERL)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
- -e 's?__AUX_BIN_DIR?$(AUX_BIN_DIR)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
+ -e 's?__SCRIPT_DIR?$(FINAL_SCRIPT_DIR)?g' \
+ -e 's?__AUX_BIN_DIR?$(FINAL_AUX_BIN_DIR)?g' \
+ -e 's?__BIN_DIR?$(FINAL_BIN_DIR)?g' \
nucmer.pl > $(BIN_DIR)/nucmer
chmod 755 $(BIN_DIR)/nucmer
promer: promer.pl Foundation.pm
$(SED) -e 's?__PERL_PATH?$(PERL)?g' \
- -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \
- -e 's?__AUX_BIN_DIR?$(AUX_BIN_DIR)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
+ -e 's?__SCRIPT_DIR?$(FINAL_SCRIPT_DIR)?g' \
+ -e 's?__AUX_BIN_DIR?$(FINAL_AUX_BIN_DIR)?g' \
+ -e 's?__BIN_DIR?$(FINAL_BIN_DIR)?g' \
promer.pl > $(BIN_DIR)/promer
chmod 755 $(BIN_DIR)/promer
-run-mummer1: run-mummer1.csh
- $(SED) -e 's?__CSH_PATH?$(CSH)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
- run-mummer1.csh > $(BIN_DIR)/run-mummer1
+run-mummer1: ../debian/sh-replacement-scripts/run-mummer1
+ cp -a $^ $(BIN_DIR)
chmod 755 $(BIN_DIR)/run-mummer1
-run-mummer3: run-mummer3.csh
- $(SED) -e 's?__CSH_PATH?$(CSH)?g' \
- -e 's?__BIN_DIR?$(BIN_DIR)?g' \
- run-mummer3.csh > $(BIN_DIR)/run-mummer3
+run-mummer3: ../debian/sh-replacement-scripts/run-mummer3
+ cp -a $^ $(BIN_DIR)
chmod 755 $(BIN_DIR)/run-mummer3
nucmer2xfig: nucmer2xfig.pl
|
