Package: mummer / 3.23+dfsg-2

Metadata

Package Version Patches format
mummer 3.23+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
10_install_dirs.patch | (download)

scripts/Makefile | 48 23 + 25 - 0 !
1 file changed, 23 insertions(+), 25 deletions(-)

 make sure scripts will use the installation path instead of
 the temporary build path


02at_docs_web.diff | (download)

docs/web/index.html | 14 7 + 7 - 0 !
1 file changed, 7 insertions(+), 7 deletions(-)

 some pdfs were removed and have to be downloaded from the upstream website instead.
enable_building_with_tetex.patch | (download)

docs/maxmat3man.tex | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 enable building with recent tetex



fix_sf_privacy_breach_issue.patch | (download)

docs/web/examples/index.html | 3 1 + 2 - 0 !
docs/web/index.html | 5 1 + 4 - 0 !
docs/web/manual/index.html | 3 1 + 2 - 0 !
3 files changed, 3 insertions(+), 8 deletions(-)

 remove sf privacy breach script from docs


hardening.patch | (download)

Makefile | 2 1 + 1 - 0 !
src/tigr/Makefile | 4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-)

 propagate hardening options


spelling.patch | (download)

src/kurtz/libbasedir/procopt.c | 2 1 + 1 - 0 !
src/kurtz/mm3src/procmaxmat.c | 2 1 + 1 - 0 !
src/tigr/delta.hh | 2 1 + 1 - 0 !
src/tigr/mgaps.cc | 2 1 + 1 - 0 !
src/tigr/postnuc.cc | 8 4 + 4 - 0 !
src/tigr/postpro.cc | 10 5 + 5 - 0 !
6 files changed, 13 insertions(+), 13 deletions(-)

 spelling


addition_from_mugsy.patch | (download)

src/tigr/Makefile | 8 7 + 1 - 0 !
src/tigr/delta2blocks.cc | 647 647 + 0 - 0 !
src/tigr/delta2maf.cc | 793 793 + 0 - 0 !
src/tigr/tigrinc.cc | 86 85 + 1 - 0 !
src/tigr/tigrinc.hh | 3 3 + 0 - 0 !
5 files changed, 1535 insertions(+), 2 deletions(-)

 the tool mugsy provides an old mummer code copy (version 3.20)
 with a additional tools delta2maf and delta2blocks.
 Since the mummer copy in mugsy does not feature all the mummer patches we
 rather inject the additional tool right into the Debian package.
 .
 The source can be found in
    svn://svn.code.sf.net/p/mugsy/code/trunk