Makefile | 37 0 + 37 - 0 !
1 file changed, 37 deletions(-)

 remove upstream building and publishing script

doc/parsing.rst | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 fix spelling errors

tests/common_py.py | 6 6 + 0 - 0 !
tests/test_dedup.py | 9 6 + 3 - 0 !
tests/test_filterbycov.py | 5 4 + 1 - 0 !
tests/test_flip.py | 5 4 + 1 - 0 !
tests/test_header.py | 5 4 + 1 - 0 !
tests/test_markasdup.py | 5 4 + 1 - 0 !
tests/test_merge.py | 10 6 + 4 - 0 !
tests/test_parse.py | 7 5 + 2 - 0 !
tests/test_parse2.py | 7 5 + 2 - 0 !
tests/test_restrict.py | 5 4 + 1 - 0 !
tests/test_scaling.py | 5 4 + 1 - 0 !
tests/test_select.py | 17 10 + 7 - 0 !
tests/test_sort.py | 5 4 + 1 - 0 !
tests/test_split.py | 5 4 + 1 - 0 !
tests/test_stats.py | 15 9 + 6 - 0 !
15 files changed, 79 insertions(+), 32 deletions(-)

 tests to python3

pairtools/lib/bam_header.h | 37 37 + 0 - 0 !
pairtools/lib/parse_pysam.pxd | 27 27 + 0 - 0 !
2 files changed, 64 insertions(+)

 the bam_dup1 function desc is missing from pysam, hence manually add in a couple
 of functions

pytest.ini | 6 0 + 6 - 0 !
1 file changed, 6 deletions(-)

 do not run coverage tests, it makes no sense to run those downstream

pyproject.toml | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 no runtime dependency from cython
Bug-Debian: https://bugs.debian.org/1057997

pairtools/cli/select.py | 2 1 + 1 - 0 !
pairtools/lib/stats.py | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

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