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Description: Enable propagation of hardening flags
Author: Andreas Tille <tille@debian.org>
Date: Tue, 15 May 2012 11:10:59 +0200
--- paml.orig/src/Makefile
+++ paml/src/Makefile
@@ -1,27 +1,27 @@
PRGS = baseml codeml basemlg mcmctree pamp evolver yn00 chi2
-CC = cc # cc, gcc, cl
+CC ?= cc # cc, gcc, cl
-CFLAGS = -O3
+CFLAGS += -O3
#CFLAGS = -fast
-LIBS = -lm # -lM
+LIBS = $(LDFLAGS) -lm # -lM
all : $(PRGS)
baseml : baseml.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ baseml.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ baseml.c tools.c $(LIBS)
basemlg : basemlg.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ basemlg.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ basemlg.c tools.c $(LIBS)
codeml : codeml.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ codeml.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ codeml.c tools.c $(LIBS)
evolver : evolver.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ evolver.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ evolver.c tools.c $(LIBS)
pamp : pamp.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ pamp.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ pamp.c tools.c $(LIBS)
mcmctree : mcmctree.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ mcmctree.c tools.c $(LIBS)
- $(CC) $(CFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ mcmctree.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.c $(LIBS)
yn00: yn00.c tools.c paml.h
- $(CC) $(CFLAGS) -o $@ yn00.c tools.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ yn00.c tools.c $(LIBS)
chi2 : chi2.c
- $(CC) $(CFLAGS) -o $@ chi2.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) -o $@ chi2.c $(LIBS)
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