Package: pbbam / 0.7.4+ds-1

Metadata

Package Version Patches format
pbbam 0.7.4+ds-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
ssl md5.patch | (download)

src/MD5.cpp | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use libssl for md5.h rather than cram
 cram/md5.h was part of HTSlib [1] (seems to have been removed in the current
 development tree), but those headers are not installed by that
 package's build system. md5.h in particular has a very generic function,
 served apparently by libssl. Furthermore, the cram/* headers are not intended
 to be used directly [2]. This patch uses libssl to provide md5.h for this
 package.
 .
 1. https://anonscm.debian.org/cgit/debian-med/htslib.git/tree/cram/md5.h?id=12251926b9d0265738d701bb0add6fe9d070ccb3
 2. http://sourceforge.net/p/samtools/mailman/message/33488076/
remove bam2sam.patch | (download)

tools/CMakeLists.txt | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 exclude the bam2sam utility
 It is a convenience tool provided by upstream to avoid depending on
 samtools. We actually have trouble building it in Debian and have
 easy access to samtools.