Package: pbbam / 1.6.0+dfsg-2

Metadata

Package Version Patches format
pbbam 1.6.0+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
use_debian_packaged_python3 cram.patch | (download)

tests/meson.build | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 use python3-cram instead of cram code copy


python3.patch | (download)

meson.build | 2 1 + 1 - 0 !
tests/scripts/generate_data.py | 9 3 + 6 - 0 !
2 files changed, 4 insertions(+), 7 deletions(-)

 use python3 in build time test suite


results_with_latest_samtools.patch | (download)

tests/src/cram/pbmerge_aligned_ordering.t.in | 12 6 + 6 - 0 !
tests/src/cram/pbmerge_dataset.t.in | 6 3 + 3 - 0 !
tests/src/cram/pbmerge_fofn.t.in | 8 4 + 4 - 0 !
tests/src/cram/pbmerge_mixed_ordering.t.in | 4 2 + 2 - 0 !
tests/src/cram/pbmerge_pacbio_ordering.t.in | 12 6 + 6 - 0 !
5 files changed, 21 insertions(+), 21 deletions(-)

 adapt test results to latest samtools
boost_optional.patch | (download)

include/pbbam/ReadGroupInfo.h | 1 1 + 0 - 0 !
tests/src/test_ReadGroupInfo.cpp | 6 3 + 3 - 0 !
2 files changed, 4 insertions(+), 3 deletions(-)

 fix boost errors at build time
 In addition to one more header included, there are a couple of checks which
 are disabled.  The patch may not be suitable as is, but the issue should be
 reported upstream.