etc/settings.yaml.in | 2 1 + 1 - 0 !
pigx_rnaseq.py | 6 3 + 3 - 0 !
test.sh.in | 2 1 + 1 - 0 !
tests/settings.yaml | 7 7 + 0 - 0 !
tests/test_salmon/test_salmon_index.sh.in | 2 1 + 1 - 0 !
5 files changed, 13 insertions(+), 6 deletions(-)

 reset some timeout values to pass tests, adjust file name for salmon 1.3.0

pigx_rnaseq.py | 2 1 + 1 - 0 !
scripts/runDeseqReport.R | 5 3 + 2 - 0 !
2 files changed, 4 insertions(+), 3 deletions(-)

 use --selfcontained=false option in rundeseqreport.r