Package: plink / 1.07-7

gcc-4.7.patch Patch series | download
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Author: Rodolfo García Peñas <kix@kix.es>, Dmitry Nezhevenko <dion@inhex.net>, Fernando Lemos <fernandotcl@gmail.com
Reviewed_by: Andreas Tille <tille@debian.org>
Date: Sun, 22 Apr 2012 23:37:53 +0300
Bug-Closed: http://bugs.debian.org/667325
Description: Fix nested declaration which fails in gcc-4.7
 For more detailed explanation see
   http://lists.debian.org/debian-mentors/2012/04/msg00410.html
 and the other mails in this thread

--- plink-1.07.orig/sets.cpp
+++ plink-1.07/sets.cpp
@@ -768,11 +768,11 @@
       //////////////////////////////////////////////
       // Reset original missing status
 
-      vector<Individual*>::iterator i = PP->sample.begin();
-      while ( i != PP->sample.end() )
+      vector<Individual*>::iterator i_iter = PP->sample.begin();
+      while ( i_iter != PP->sample.end() )
 	{
-	  (*i)->missing = (*i)->flag;
-	  ++i;
+	  (*i_iter)->missing = (*i_iter)->flag;
+	  ++i_iter;
 	}
 
       ////////////////////////////////////////////////
--- plink-1.07.orig/elf.cpp
+++ plink-1.07/elf.cpp
@@ -1175,10 +1175,10 @@
 	  << setw(8) << gcnt << " "
 	  << setw(8) << (double)cnt / (double)gcnt << "\n";
 
-      map<int,int>::iterator i = chr_cnt.begin();
-      while ( i != chr_cnt.end() )
+      map<int,int>::iterator i_iter = chr_cnt.begin();
+      while ( i_iter != chr_cnt.end() )
 	{
-	  int c = i->first;
+	  int c = i_iter->first;
 	  int x = chr_cnt.find( c )->second;
 	  int y = chr_gcnt.find( c )->second;
 	  
@@ -1189,7 +1189,7 @@
 	      << setw(8) << y << " "
 	      << setw(8) << (double)x / (double)y << "\n";
 	  
-	  ++i;
+	  ++i_iter;
 	}
       
     }
--- plink-1.07.orig/idhelp.cpp
+++ plink-1.07/idhelp.cpp
@@ -772,12 +772,12 @@
       for (int j = 0 ; j < jointField.size(); j++ )
 	{
 	  set<IDField*> & jf = jointField[j];
-	  set<IDField*>::iterator j = jf.begin();
+	  set<IDField*>::iterator j_iter = jf.begin();
 	  PP->printLOG(" { ");
-	  while ( j != jf.end() )
+	  while ( j_iter != jf.end() )
 	    {
-	      PP->printLOG( (*j)->name + " " );
-	      ++j;
+	      PP->printLOG( (*j_iter)->name + " " );
+	      ++j_iter;
 	    }
 	  PP->printLOG(" }");
 	}