prody/tests/proteins/test_localpdb.py | 3 3 + 0 - 0 !
prody/tests/proteins/test_wwpdb.py | 2 2 + 0 - 0 !
2 files changed, 5 insertions(+)

 forbid network access for tests.

setup.py | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

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prody/compounds/pdbligands.py | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 fix test failure with numpy 1.24.

.gitignore | 4 4 + 0 - 0 !
prody/atomic/atom.py | 2 1 + 1 - 0 !
prody/atomic/pointer.py | 18 17 + 1 - 0 !
prody/proteins/ciffile.py | 34 34 + 0 - 0 !
prody/proteins/pdbfile.py | 2 1 + 1 - 0 !
prody/sequence/msa.py | 2 0 + 2 - 0 !
prody/tests/datafiles/__init__.py | 3 3 + 0 - 0 !
prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta | 16 16 + 0 - 0 !
prody/tests/sequence/test_analysis.py | 7 4 + 3 - 0 !
prody/utilities/catchall.py | 18 1 + 17 - 0 !
prody/utilities/seqtools.py | 37 27 + 10 - 0 !
setup.py | 2 1 + 1 - 0 !
12 files changed, 109 insertions(+), 36 deletions(-)

 [patch 01/15] fix alignbiopairwise for updated biopython

prody/tests/atomic/test_select.py | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

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