Package: psortb / 3.0.6+dfsg-1~bpo9+1

Metadata

Package Version Patches format
psortb 3.0.6+dfsg-1~bpo9+1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
biosquid_includes.patch | (download)

algorithm-hmm/Makefile.PL | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 include header files provided by libsquid-dev


fix_hmmer_interface.patch | (download)

algorithm-hmm/hmm-binding.cpp | 13 7 + 6 - 0 !
1 file changed, 7 insertions(+), 6 deletions(-)

 enable linking against libhmmer.a as packaged
 in hmmer2 source package


fix_build_Algorithm SVM.patch | (download)

bio-tools-psort-svmloc/Makefile.PL | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 fix build of code copy of algorithm-svm


remove bundled party libsvm.patch | (download)

bio-tools-psort-svmloc/MANIFEST | 1 0 + 1 - 0 !
bio-tools-psort-svmloc/Makefile.PL | 4 2 + 2 - 0 !
bio-tools-psort-svmloc/bindings.h | 4 3 + 1 - 0 !
3 files changed, 5 insertions(+), 4 deletions(-)

 remove source from bundled libsvm and adjust build system.
 .
 Change by Steve Langasek enables build with -Wl, --as-needed
path_to_conf.patch | (download)

psort/bin/psort | 6 3 + 3 - 0 !
psort/server/startup.pl | 6 3 + 3 - 0 !
2 files changed, 6 insertions(+), 6 deletions(-)

 fix path to conf and other binaries
 It is assumed that conf should not be changed by the user.
 In case it turns out that users need to change this the files should be
 moved to /etc/psortb