algorithm-hmm/Makefile.PL | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 include header files provided by libsquid-dev

algorithm-hmm/hmm-binding.cpp | 13 7 + 6 - 0 !
1 file changed, 7 insertions(+), 6 deletions(-)

 enable linking against libhmmer.a as packaged
 in hmmer2 source package

bio-tools-psort-svmloc/Makefile.PL | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 fix build of code copy of algorithm-svm

bio-tools-psort-svmloc/MANIFEST | 1 0 + 1 - 0 !
bio-tools-psort-svmloc/Makefile.PL | 4 2 + 2 - 0 !
bio-tools-psort-svmloc/bindings.h | 4 3 + 1 - 0 !
3 files changed, 5 insertions(+), 4 deletions(-)

 remove source from bundled libsvm and adjust build system.
 .
 Change by Steve Langasek enables build with -Wl, --as-needed

psort/bin/psort | 6 3 + 3 - 0 !
psort/server/startup.pl | 6 3 + 3 - 0 !
2 files changed, 6 insertions(+), 6 deletions(-)

 fix path to conf and other binaries
 It is assumed that conf should not be changed by the user.
 In case it turns out that users need to change this the files should be
 moved to /etc/psortb

lib/Bio/Tools/PSort/Module/InputI.pm | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix module path in inputi.pm

bio-tools-psort-modhmm/binding.c | 1 1 + 0 - 0 !
bio-tools-psort-modhmm/modhmm.xs | 1 1 + 0 - 0 !
bio-tools-psort-modhmm/modhmm0.92b/funcs.h | 3 3 + 0 - 0 !
3 files changed, 5 insertions(+)

 add missing header files
 The patch also complements the funcs.h header file so the Perl XS file
 knows what find_helices is.  For the record, it is defined in
 libmodhmm-dev, there is probably some much needed cleanup to do).

Bug-Debian: https://bugs.debian.org/1070459