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Description: Explicitly case variable to category dtype
Author: Nilesh Patra <nilesh@debian.org>
Last-Update: 2021-11-03
--- a/pyranges/methods/concat.py
+++ b/pyranges/methods/concat.py
@@ -43,7 +43,8 @@
if any(strand_info) and not all(strand_info):
new_res = {}
for k, v in res.items():
- v.loc[:, "Strand"] = v.Strand.cat.add_categories(["."])
+ type_v = v.Strand.astype('category')
+ v.loc[:, "Strand"] = type_v.cat.add_categories(["."])
new_res[k] = v.assign(Strand=v.Strand.fillna("."))
res = pr.PyRanges(new_res)
res.Strand = res.Strand
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