Package: pyranges / 0.0.111+ds-9
Metadata
Package | Version | Patches format |
---|---|---|
pyranges | 0.0.111+ds-9 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
fix_dtype.patch | (download) |
pyranges/methods/concat.py |
3 2 + 1 - 0 ! |
explicitly case variable to category dtype |
reorder.patch | (download) |
setup.py |
2 1 + 1 - 0 ! |
add patch to fix ftbfs |
numpy_1.24.patch | (download) |
pyranges/pyranges.py |
6 3 + 3 - 0 ! |
adapt to numpy 1.24 Bug-Debian: https://bugs.debian.org/1028852 |
healthcheck all.patch | (download) |
tests/test_unary.py |
2 1 + 1 - 0 ! |
fix deprecated healthcheck.all() decorator parameter. The HealthCheck.all() method has been deprecated in favor of specifying in a list which checks to ignore in a subsequent test function. The error message suggests use of HealthCheck.return_value. Other options are documented on Python hypothesis module documentation[1]. It is worth noting the attribute return_value itself is marked as deprecated, so we might as well just buy us some time until a possibly more appropriate fix. . [1]: https://hypothesis.readthedocs.io/en/latest/settings.html#health-checks |
no_install_depends_cython.patch | (download) |
setup.py |
2 1 + 1 - 0 ! |
no runtime dependency from cython Bug-Debian: https://bugs.debian.org/1058012 |
pandas2.0.patch | (download) |
pyranges/pyranges.py |
2 1 + 1 - 0 ! |
fix for pandas 2.0 Bug-Debian: https://bugs.debian.org/1044064 |
fix test_unary.patch | (download) |
tests/test_unary.py |
2 1 + 1 - 0 ! |
fix expected cluster result. Somehow, the statement in its original form ceased to reflect the change of dtype to numpy's int32 for the expected result, causing a test failure because the reference data now has wrongly int64 numpy dtype. Slightly changing the way the assignation of the smaller dtype is done fixes the problem. |