Package: python-biopython / 1.86+dfsg-1
Metadata
| Package | Version | Patches format |
|---|---|---|
| python-biopython | 1.86+dfsg-1 | 3.0 (quilt) |
Patch series
view the series file| Patch | File delta | Description |
|---|---|---|
| remove_mathml qname.patch | (download) |
Bio/Entrez/DTDs/modules.ent |
7 0 + 7 - 0 ! |
remove non dfsg free dtd |
| privacy_breach.patch | (download) |
Tests/Blast/html_msgid_29_blastx_001.html |
5 2 + 3 - 0 ! |
do not use privacy-breach-logo |
| privacy_breach_ie9.patch | (download) |
Doc/cookbook/Restriction/Restriction.html |
3 0 + 3 - 0 ! |
fix privacy breach with html5shiv |
| fix type cast i386.patch | (download) |
Bio/PDB/binary_cif.py |
10 9 + 1 - 0 ! |
fix test failure on 32-bit platforms.
This fixes the following symptom while running the test suite of
Biopython on 32-bit processors:
.
File "/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Bio/PDB/binary_cif.py", line 85, in _run_length_decoder
decoded_data = np.repeat(data[::2].astype(dtype), data[1::2])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 466, in repeat
return _wrapfunc(a, 'repeat', repeats, axis=axis)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 68, in _wrapfunc
return _wrapit(obj, method, *args, **kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 45, in _wrapit
result = getattr(asarray(obj), method)(*args, **kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: Cannot cast array data from dtype('uint32') to dtype('int32') according to the rule 'safe'
|
1
