Package: python-biopython / 1.86+dfsg-1

Metadata

Package Version Patches format
python-biopython 1.86+dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
remove_mathml qname.patch | (download)

Bio/Entrez/DTDs/modules.ent | 7 0 + 7 - 0 !
1 file changed, 7 deletions(-)

 remove non dfsg free dtd

privacy_breach.patch | (download)

Tests/Blast/html_msgid_29_blastx_001.html | 5 2 + 3 - 0 !
1 file changed, 2 insertions(+), 3 deletions(-)

 do not use privacy-breach-logo

privacy_breach_ie9.patch | (download)

Doc/cookbook/Restriction/Restriction.html | 3 0 + 3 - 0 !
1 file changed, 3 deletions(-)

 fix privacy breach with html5shiv
fix type cast i386.patch | (download)

Bio/PDB/binary_cif.py | 10 9 + 1 - 0 !
1 file changed, 9 insertions(+), 1 deletion(-)

 fix test failure on 32-bit platforms.
 This fixes the following symptom while running the test suite of
 Biopython on 32-bit processors:
 .
           File "/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Bio/PDB/binary_cif.py", line 85, in _run_length_decoder
             decoded_data = np.repeat(data[::2].astype(dtype), data[1::2])
                            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
           File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 466, in repeat
             return _wrapfunc(a, 'repeat', repeats, axis=axis)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
           File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 68, in _wrapfunc
             return _wrapit(obj, method, *args, **kwds)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
           File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 45, in _wrapit
             result = getattr(asarray(obj), method)(*args, **kwds)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
         TypeError: Cannot cast array data from dtype('uint32') to dtype('int32') according to the rule 'safe'