Package: python-deeptools / 3.5.0-1

Metadata

Package Version Patches format
python-deeptools 3.5.0-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
tmp_inhibit_test_readFiltering.patch | (download)

deeptools/test/test_readFiltering.py | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 not running one test that complains about a file not having
 been closed: https://github.com/deeptools/deepTools/issues/903

python2to3_for_executables.patch | (download)

bin/alignmentSieve | 2 1 + 1 - 0 !
bin/bamCompare | 2 1 + 1 - 0 !
bin/bamCoverage | 2 1 + 1 - 0 !
bin/bamPEFragmentSize | 2 1 + 1 - 0 !
bin/bigwigCompare | 2 1 + 1 - 0 !
bin/computeGCBias | 2 1 + 1 - 0 !
bin/computeMatrix | 2 1 + 1 - 0 !
bin/computeMatrixOperations | 2 1 + 1 - 0 !
bin/correctGCBias | 2 1 + 1 - 0 !
bin/deeptools | 2 1 + 1 - 0 !
bin/estimateReadFiltering | 2 1 + 1 - 0 !
bin/estimateScaleFactor | 2 1 + 1 - 0 !
bin/multiBamSummary | 2 1 + 1 - 0 !
bin/multiBigwigSummary | 2 1 + 1 - 0 !
bin/plotCorrelation | 2 1 + 1 - 0 !
bin/plotCoverage | 2 1 + 1 - 0 !
bin/plotEnrichment | 2 1 + 1 - 0 !
bin/plotFingerprint | 2 1 + 1 - 0 !
bin/plotHeatmap | 2 1 + 1 - 0 !
bin/plotPCA | 4 2 + 2 - 0 !
bin/plotProfile | 2 1 + 1 - 0 !
deeptools/SES_scaleFactor.py | 2 1 + 1 - 0 !
deeptools/alignmentSieve.py | 3 2 + 1 - 0 !
deeptools/bamCompare.py | 2 1 + 1 - 0 !
deeptools/bamCoverage.py | 2 1 + 1 - 0 !
deeptools/bamPEFragmentSize.py | 2 1 + 1 - 0 !
deeptools/bigwigCompare.py | 2 1 + 1 - 0 !
deeptools/computeGCBias.py | 2 1 + 1 - 0 !
deeptools/computeMatrix.py | 2 1 + 1 - 0 !
deeptools/computeMatrixOperations.py | 2 1 + 1 - 0 !
deeptools/correctGCBias.py | 2 1 + 1 - 0 !
deeptools/deepBlue.py | 2 1 + 1 - 0 !
deeptools/deeptools_list_tools.py | 2 1 + 1 - 0 !
deeptools/estimateReadFiltering.py | 2 1 + 1 - 0 !
deeptools/getScaleFactor.py | 2 1 + 1 - 0 !
deeptools/multiBamSummary.py | 2 1 + 1 - 0 !
deeptools/multiBigwigSummary.py | 2 1 + 1 - 0 !
deeptools/plotCorrelation.py | 2 1 + 1 - 0 !
deeptools/plotCoverage.py | 2 1 + 1 - 0 !
deeptools/plotEnrichment.py | 2 1 + 1 - 0 !
deeptools/plotFingerprint.py | 2 1 + 1 - 0 !
deeptools/plotHeatmap.py | 2 1 + 1 - 0 !
deeptools/plotPCA.py | 2 1 + 1 - 0 !
deeptools/plotProfile.py | 2 1 + 1 - 0 !
deeptools/writeBedGraph_bam_and_bw.py | 2 1 + 1 - 0 !
scripts/convertChromsBigWig.py | 2 1 + 1 - 0 !
scripts/split_bed_into_multiple_files.py | 2 1 + 1 - 0 !
47 files changed, 49 insertions(+), 48 deletions(-)

 use python3 as interpreter