Package: python-intervaltree-bio / 1.0.1-4

Metadata

Package Version Patches format
python-intervaltree-bio 1.0.1-4 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
offline test data.patch | (download)

conftest.py | 20 20 + 0 - 0 !
tests/genomeintervaltree_test.py | 16 6 + 10 - 0 !
2 files changed, 26 insertions(+), 10 deletions(-)

 allow tests to be run using pre-downloaded data files
 allow passing --datadir to pytest to use local data files without
 attempting a download.
disable doctests.patch | (download)

setup.cfg | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 disable doctests
 They require network access or patching to use existing data files
setup cfg deprecation.patch | (download)

setup.cfg | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 update pytest setup.cfg entry
 Address this warning:
 ============================ pytest-warning summary ============================
 WC1 None [pytest] section in setup.cfg files is deprecated, use [tool:pytest] instead.
 ================= 4 passed, 1 pytest-warnings in 83.34 seconds =================
0001 Replace all .search calls with .overlap in tests and.patch | (download)

README.rst | 2 1 + 1 - 0 !
intervaltree_bio/__init__.py | 10 5 + 5 - 0 !
tests/genomeintervaltree_test.py | 4 2 + 2 - 0 !
3 files changed, 8 insertions(+), 8 deletions(-)

 [patch] replace all .search() calls with .overlap()  in tests and
 documentation