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Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 29 Dec 2022 11:21:48 +0100
Bug-Debian: https://bugs.debian.org/1027211
Description: Fix AttributeError: module 'numpy' has no attribute 'float'.
with numpy/1.24.1
--- a/pbcore/io/dataset/DataSetMembers.py
+++ b/pbcore/io/dataset/DataSetMembers.py
@@ -827,7 +827,7 @@ class Filters(RecordWrapper):
'mapqv': (lambda x: x.mapQV),
'accuracy': (
lambda x: (np.ones(len(x.nMM), dtype='f4') -
- (x.nMM + x.nIns + x.nDel).astype(np.float) /
+ (x.nMM + x.nIns + x.nDel).astype(float) /
(x.nM + x.nMM + x.nIns)))
}
base = self._pbiVecAccMap()
@@ -869,11 +869,11 @@ class Filters(RecordWrapper):
'bcq': int,
'bq': int,
'qs': int,
- 'rq': np.float,
+ 'rq': float,
'pos': int,
'tstart': int,
'tend': int,
- 'accuracy': np.float,
+ 'accuracy': float,
'readstart': int,
'cx': PbiFlags.flagMap,
'n_subreads': int,
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