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Description: Try looking for mapping.xml in the current directory
helps when package is not installed for generating docs etc
Origin: Nilesh Patra <nilesh@debian.org>
Last-Update: 2021-12-23
--- a/pbcore/chemistry/chemistry.py
+++ b/pbcore/chemistry/chemistry.py
@@ -34,8 +34,12 @@
def _loadBarcodeMappings():
- mappingFname = resource_filename(Requirement.parse(
+ try:
+ mappingFname = resource_filename(Requirement.parse(
'pbcore'), 'pbcore/chemistry/resources/mapping.xml')
+ except:
+ mappingFname = os.path.join(os.path.dirname(__file__),
+ 'resources/mapping.xml')
mappings = _loadBarcodeMappingsFromFile(mappingFname)
updMappingDir = os.getenv("SMRT_CHEMISTRY_BUNDLE_DIR")
if updMappingDir:
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