pybedtools/featurefuncs.pyx | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 spelling typos fix

pybedtools/contrib/bigwig.py | 7 7 + 0 - 0 !
1 file changed, 7 insertions(+)

 define filenotfounderror as oserror for python 2

README.rst | 9 0 + 9 - 0 !
1 file changed, 9 deletions(-)

 remove github badges from documentation as they cause
privacy-breach-generic lintian warnings.

pybedtools/scripts/annotate.py | 2 1 + 1 - 0 !
pybedtools/scripts/examples/pbt_plotting_example.py | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 add missing shebang lines

pybedtools/contrib/plotting.py | 2 1 + 1 - 0 !
pybedtools/test/test_iter.py | 4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-)

 use yaml.safe_load instead of yaml.load which is deprecated
 Modify to use full_load where needed

pybedtools/bedtool.py | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 [patch] better detection of path for python 3.13 (address #413)

pybedtools/contrib/long_range_interaction.py | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

 [patch] use explicit namespace in docstrings of
 long_range_interaction

docs/source/conf.py | 7 0 + 7 - 0 !
1 file changed, 7 deletions(-)

 pybuild puts the extensions in a different location

pybedtools/test/test_1.py | 66 25 + 41 - 0 !
pybedtools/test/test_cbedtools.py | 9 0 + 9 - 0 !
pybedtools/test/test_contrib.py | 2 1 + 1 - 0 !
pybedtools/test/test_gzip_support.py | 8 0 + 8 - 0 !
pybedtools/test/test_helpers.py | 4 3 + 1 - 0 !
pybedtools/test/test_issues.py | 35 16 + 19 - 0 !
pybedtools/test/test_iter.py | 9 0 + 9 - 0 !
pybedtools/test/tfuncs.py | 10 0 + 10 - 0 !
8 files changed, 45 insertions(+), 98 deletions(-)

 make test temporary directories not in the "test" folder