Package: python-pysam / 0.14+ds-2

Metadata

Package Version Patches format
python-pysam 0.14+ds-2 3.0 (quilt)

Patch series

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Patch File delta Description
execute linking tests only when explicitely reque.patch | (download)

.travis.yml | 2 0 + 2 - 0 !
1 file changed, 2 deletions(-)

 execute linking tests only when explicitly
 requested via PYSAM_LINKING_TESTS env var. Keep on travis. Fixes #534


xfail.patch | (download)

tests/AlignmentFile_test.py | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

 temporarily skip failing test
 See https://github.com/pysam-developers/pysam/issues/542
exclude_tests_accessing_remote_http.patch | (download)

save/pysam_test2.6.py | 55 0 + 55 - 0 !
tests/AlignmentFile_test.py | 75 0 + 75 - 0 !
tests/tabix_test.py | 60 0 + 60 - 0 !
3 files changed, 190 deletions(-)

 exclude tests trying to access remote http sites and thus need
 to fail in a chroot without network access.
 .
 Remark: Any more elegant method than dumb removal to exclude the tests would
 be welcome.


skip_test_needing_missing_data.patch | (download)

tests/AlignmentFile_test.py | 5 0 + 5 - 0 !
tests/pysam_data/Makefile | 3 1 + 2 - 0 !
2 files changed, 1 insertion(+), 7 deletions(-)

 do not depend from non-existing data file in make test target
 (There is no such file example_reverse_complement.bam)